Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1292 |
Symbol | |
ID | 5869052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1438855 |
End bp | 1442334 |
Gene Length | 3480 bp |
Protein Length | 1159 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641546391 |
Product | integral membrane sensor hybrid histidine kinase |
Protein accession | YP_001667535 |
Protein GI | 167032304 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0372313 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.867611 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTTGT CCAGCGGGCT GATCGCCGTG GTCGCCCTGG CCTATATGGC CATCATGTTC GCCATCGCCT TCTATGGCGA CCGCCGCAGC ACGCCGTTGC CGCCGAAGCT GCGTGCCTGG GTGTACAGCC TGTCGCTGGC CGTGTACTGC ACCAGCTGGA CCTTCTTCGG CGCCGTCGGC CAGGCCGCCG AACAGCTCTG GGCGTTCCTG CCCATCTACC TGGGTCCGGT GCTGCTGCTG ATCTTCGCGC CTTGGGTGCT GCAGAAGATG GTGCTGATCA GCAAACAGCA GAACATCACC TCGATCGCCG ACTTCATCGC CGCGCGCTAT GGCAAGTCGC AGACACTGGC GGTGGTGGTG GCGCTGATCT GCCTGATCGG CGTGCTGCCG TACATCGCCT TGCAGCTCAA GGGCATCGTG CTGGGCGTGA ACCTGCTGAT CGGCGCCAAC GCTGATGCAA CCGGTACCCG CGTGCAGGAC ACCGCGCTGG TGGTGTCGCT GGTGCTGGCA CTGTTCGCCA TCGTGTTCGG CACCCGCAGC CTGGACGTGA CCGAACACCA CCGTGGCATG GTCCTGGCGA TTGCCTTCGA ATCGCTGATC AAGCTGCTGG CCTTCCTCGC CGTCGGTATC TTCGTGGTCT TCAACCTGTA TGACGGTTTC GACGACCTGT TCAGCCAGGC CCGCCAGTCG ATCCACCTGC AGGACTATTG GCAGGAGACC ATCAACTGGC CGTCGATGGT GGTGCAAACC GCCGTGGCGA TGATGGCGAT CATCTGCCTG CCACGGCAAT TCCATGTGAC CGTGGTGGAG AACATCGAAC CCCAGGACAT GCGCCTGGCG CGCTGGGTCT TCCCAATGTA CCTGGCACTG GCCGCGCTGT TCGTGGTGCC GATTGCCCTG GCCGGGCAGA TGCTGCTGCC AGGCACGGTG ATTTCCGACT CGTTCGTCAT CAGCCTGCCA CTGGCCGAGG CGCACCCAAG CCTGGCCCTG CTGGCGTTCA TCGGCGGCGC CTCGGCGGCC ACCGGCATGG TCATCGTCGA GGCCGTGGCG TTATCGACCA TGGTGTCCAA CGACATGCTG CTGCCCTGGC TGCTGCGGCG CAACAACGCC GAGCGGCCGT TCGAAGCGTT CCGCCACTGG ATGCTTTCGG TACGCCGGGT GACCATCGTG GTGATCCTGC TGCTGGCCTA TGTCAGCTAT CGCCTGCTGG GCTCTACCGC CAGCCTGGCG ACCATCGGCC AGATCGCCTT TGCCGCCGTG ACTCAGCTCA CCCCAGCCAT GCTCGGCGCG CTGTACTGGA AGCAGGCCAA CCGCCGTGGC GTGTTCGCCG GCCTGGCCGC TGGCATTTTC CTGTGGTTCT ACACCTTGGT GCTGCCAATC GCCGCGCACA GCCTGGGCTG GTCGCTGCAG CTGTTCCCAG GGTTGGCGTG GCTGCACGGC AACCCGCTGA ACCTGCCGAT CAGCCCGCTG ACCCAGGGCG TGGTGCTGTC ACTGGCGGGC AACTTCACCC TGTTCGCCTG GGTGTCGGTG CTGTCGCGCA CGCGGGTTTC CGAACACTGG CAGGCCGGCC GCTTCATCGG CCAGCAAACC AGCGCCCGGC CCAGCAGCAA GCCGCTGCTG GCGGTGCAGA TCGACGACTT GCTGACCCTG GCCTCGCGCT TTGTCGGTGA GGAGCGCGCG CGGCAGAGCT TCATCCGTTT CGCCTACCGC CAGGGCAAGG GCTTCAACCC CAACCAGAAC GCCGACGGTG ACTGGATCGA GCACACCGAA CGGTTGCTGG CCGGGGTGCT CGGCACCTCG TCGACCCGCG CTGTGGTCAA GGCCGCCATC GAAGGCCGCG ACATGCAACT GGAAGACGTG GTGCGCATCG CCGACGAAGC CAGCGAGGTG CTGCAGTTCA ACCGCGCCTT GCTGCAAGGC GCCATCGAGA ACATCAACCA GGGCATCAGC GTGGTCGACC AGAACCTGCA TCTGGTGGCC TGGAACCGTC GCTATCTGGA GCTGTTCAAC TACCCCGACG GGCTGATCAG CGTCGGCCGG CCTATTGCCG ACATCATCCG CTACAACGCC GAACGTGGCC TGTGCGGTCC GGGCGAGGCC CAGGTGCATG TGGCGCGTCG TCTGCACTGG ATGCGCCAGG GCCGCGCGCA CTCCTCCGAG CGGCTGTTCC CCAATGGCCG CGTGATCGAA CTGATCGGCA ACCCGATGCC CGGCGGCGGC TTTGTCATGA GTTTCACCGA CATCACCCCG TTCCGCGAGG CCGAACAGGC CCTGCGCGAT GCCAACGAAG GCCTTGAGCA ACGGGTGGCG GAGCGCACCC ACGAGCTGTC ACAACTGAAC CAGGCACTGT CCGAAGCCAA GAGCCAGGCC GAAGCGGTAA GCAAGTCCAA GACCCGCTTC CTGGCGGCGG TCAGCCATGA CCTGATGCAG CCACTGAACG CCGCCAGGCT GTTCTCCGCC GCCTTGTCGC AGCAGGCCGA GGGCATGAAT GAAGAAGCCC AGCAACTGGT GCAGCACATG GACAGCTCGC TGCGCTCGGC CGAAGAGCTG ATCAGCGACC TGCTGGACAT CTCACGCCTG GAGAATGGCA AGATCACCCC GGATGCCAAG CCGTTCGCCC TCAACGAACT GTTCGACACC TTGGGGGCCG AATTCAAATT GCTGGCGGCG GAAAAAGGCC TGGAGTTCCG CCTGCGCGGC AGCCGCCTGC GGGTGGACAG CGACATGAAA CTGCTGCGCC GGGTGCTGCA GAACTTCCTC ACCAATGCCC TGCGCTACGG CAAGAGCCCA ATCCTGCTGG GCGCGCGCCG ACAGGGCGAG CGCCTGTGGC TGGAGGTATG GGACCGCGGC CCGGGCATTG CCGACGACAA GCTGCAGGTG ATCTTCCAGG AGTTCAAGCG CCTGGACAGC CACCAGACCC GCGCCGAGAA GGGCCTGGGC CTGGGCCTGG CGATCGCCGA CGGCCTGTGC CGGGTGCTGG GGCACCCGCT GGAAGTGCGC TCATGGCCGG GCAAGGGCAC GGTGTTCCGC GTCAGCGTGC CGATTGCCCG CCAGGCCGCC CCGGTGCCAA GTGCCCCGGT GGAGCAACAA GGCGGCCAGC CACTGGCCGG GCTGCAAGTG CTGTGCGTGG ACAACGAAGA CAGCATCCTG ATTGGCATGA ACAGCCTGCT CAGCCGGTGG GGTTGCCAGG TATGGACCGC GCGTAACCAA GCTGAATGCG AAGCCCTGCT GGCCAAAGGC ATGCGCCCGC ACCTGGCGCT GGTGGACTAC CACCTGGATG ACGGTGAAAC CGGCACCGGG CTGATGGGCT GGCTACGGGC GCGCCTGGGT GAACCGGTGC CCGGTGTGGT GATCAGTGCC GACGGCAGCA AGGAAACCAT CGCCCTGGTG CATGCATCGG GCCTGGATTA CCTGGCCAAG CCGGTGAAGC CAGCAGCCCT GCGCGCCATG CTCAATCGCC ATCTGAGCCT GGTTCAGTAA
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Protein sequence | MSLSSGLIAV VALAYMAIMF AIAFYGDRRS TPLPPKLRAW VYSLSLAVYC TSWTFFGAVG QAAEQLWAFL PIYLGPVLLL IFAPWVLQKM VLISKQQNIT SIADFIAARY GKSQTLAVVV ALICLIGVLP YIALQLKGIV LGVNLLIGAN ADATGTRVQD TALVVSLVLA LFAIVFGTRS LDVTEHHRGM VLAIAFESLI KLLAFLAVGI FVVFNLYDGF DDLFSQARQS IHLQDYWQET INWPSMVVQT AVAMMAIICL PRQFHVTVVE NIEPQDMRLA RWVFPMYLAL AALFVVPIAL AGQMLLPGTV ISDSFVISLP LAEAHPSLAL LAFIGGASAA TGMVIVEAVA LSTMVSNDML LPWLLRRNNA ERPFEAFRHW MLSVRRVTIV VILLLAYVSY RLLGSTASLA TIGQIAFAAV TQLTPAMLGA LYWKQANRRG VFAGLAAGIF LWFYTLVLPI AAHSLGWSLQ LFPGLAWLHG NPLNLPISPL TQGVVLSLAG NFTLFAWVSV LSRTRVSEHW QAGRFIGQQT SARPSSKPLL AVQIDDLLTL ASRFVGEERA RQSFIRFAYR QGKGFNPNQN ADGDWIEHTE RLLAGVLGTS STRAVVKAAI EGRDMQLEDV VRIADEASEV LQFNRALLQG AIENINQGIS VVDQNLHLVA WNRRYLELFN YPDGLISVGR PIADIIRYNA ERGLCGPGEA QVHVARRLHW MRQGRAHSSE RLFPNGRVIE LIGNPMPGGG FVMSFTDITP FREAEQALRD ANEGLEQRVA ERTHELSQLN QALSEAKSQA EAVSKSKTRF LAAVSHDLMQ PLNAARLFSA ALSQQAEGMN EEAQQLVQHM DSSLRSAEEL ISDLLDISRL ENGKITPDAK PFALNELFDT LGAEFKLLAA EKGLEFRLRG SRLRVDSDMK LLRRVLQNFL TNALRYGKSP ILLGARRQGE RLWLEVWDRG PGIADDKLQV IFQEFKRLDS HQTRAEKGLG LGLAIADGLC RVLGHPLEVR SWPGKGTVFR VSVPIARQAA PVPSAPVEQQ GGQPLAGLQV LCVDNEDSIL IGMNSLLSRW GCQVWTARNQ AECEALLAKG MRPHLALVDY HLDDGETGTG LMGWLRARLG EPVPGVVISA DGSKETIALV HASGLDYLAK PVKPAALRAM LNRHLSLVQ
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