| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1237 |
|---|
| Symbol | |
|---|
| ID | 5868997 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1387337 |
|---|
| End bp | 1387987 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641546336 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001667480 |
|---|
| Protein GI | 167032249 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00000000317123 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACTT ACGAAATCCT GATTGCCGAT GACCACCCAC TGTTCCGTGG CGCCCTGCGC
CAGGCCGTTA CCCTTGGCCT GGGCCCGGAT GTACGCCTGG TCGAAGTCGC GAGCATTGCC
GAACTGGAAA CCCGCCTGAG CGAAAAAGCC GACTGGGACC TGGTGCTGCT GGACTTGAAC
ATGCCGGGTG CCTACGGTTT TTCCGGGCTG GTGCTGTTGC GTGGGCAATA CCCGCAGATC
CCCGTGGTTA TGGTTTCGGC GCAGGAAGAG GCCGCCGTGG TGGTCAAGTC CCGCGAGTTT
GGCGCCAGTG GTTTCATTCC CAAATCCAGC CCCCTGGAAG TGATCCAGGA TGCGGTGCGC
AAGGTGCTCG ATGGCGAGGT CTGGTGGCCG CCGCAGGCGT TCGAGAAGGT GGATGTCTCG
GCCGAGGCCA AGGCCGCCAG CGAGGGCTTG GCCAGCCTCA CGCCGCAGCA GTTCCGCGTA
CTGACCATGG TCTGCGAAGG CCTGCTGAAC AAGCAGATCG CCTATGAGCT GAGCGTGTCG
GAAGCGACCA TCAAGGCCCA CGTTACCGCG ATCTTCCGCA AGCTGGGCGT GCGTACCCGG
ACCCAGGCCG CGCTGCTGCT GCAACAACTT GAATCGGTTG CCAGCAACTG A
|
|---|
| Protein sequence | MATYEILIAD DHPLFRGALR QAVTLGLGPD VRLVEVASIA ELETRLSEKA DWDLVLLDLN
MPGAYGFSGL VLLRGQYPQI PVVMVSAQEE AAVVVKSREF GASGFIPKSS PLEVIQDAVR
KVLDGEVWWP PQAFEKVDVS AEAKAASEGL ASLTPQQFRV LTMVCEGLLN KQIAYELSVS
EATIKAHVTA IFRKLGVRTR TQAALLLQQL ESVASN
|
|---|
| |