Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1215 |
Symbol | |
ID | 5868975 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1368824 |
End bp | 1372768 |
Gene Length | 3945 bp |
Protein Length | 1314 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641546315 |
Product | TP901 family phage tail tape measure protein |
Protein accession | YP_001667459 |
Protein GI | 167032228 |
COG category | [R] General function prediction only |
COG ID | [COG3941] Mu-like prophage protein |
TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.00365241 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCAGGCA AACTAGCGTT ATCGCTGGTG ATCGGGGGTG CTGTCGCCTC GTCGGTAGGC GCTGCATTCA AGACGGTCGA GAGCGGCATC CAGAAGCTGG AAGCCAAAGG CAACAGGGCC AAGGTGCTGA AAAGCACCAT TGGCGAAACG GTCAAGCTGC GCGAAGAGTG GAAGCGTGCA CATGACAGCG GCGCTGCCGG CGCCGACAAA CTGCTGCGCA AGCTGGACAG CAACCTGGAT GCTTTGCGCA AGCAAGGCAT TGAGGTTGGG CGCCTCAGTC GCGAGTATCA GCGGCTGGGG CGCGAGGCGA GAGCCGCCGA TCTGCAACTG AAGGGCCACC AGCAGCTGCA GGCGGGCAAG GAATCGCTCA AGTCGAACAT CGGCAAGGCG GTGGTGGCCA CGGGCGCAGC TGCTGTGCCG ACGATGATCA GTGCGAACTA TCAAGCGATC ATCCGTGACA TTGCGATCAA GGCCGATATT GTCAATAAAC CGGAGGAGCG GCAGCTCACC CGGACGGTAA TTGATACGGC CAAAGACACT GGTATGTCGC GTAATGACGT GGCCGACCTG GTCAACCAAC TGGTCGGCGC CGGTATGGAC CTCGACAAGG CGCTGTCGTA TGCGCCGGTG GCTGCCAAGT TCGCTATCGG CCAAGGCTCC TCTGGCGTCG ATACGGCGTC GATGATTCAG GCGCTGCAGC AAAACGCCAA GATCAGCGAT CCGAAGGTCA TGCAGCAGGC GCTGGAAGCT ATCGCTTACC AAGGCCAGGC GGGCAGCTTC GAGGCCAGCG ACATGGCCAA GTGGTTCCCG CAACTGCTCG CCGGCATGGA GAAGAACGGT ATCACCGGGC TGGATGCGGT GACCTCGCTG GGCTCGATGC TGCAAGTCCA GATGAAGACC GCCGGCAGTT CGGACGAGGC GGCGAACAAC TTCAAGAACT GGATGGAGAA GATCGGTTCT GGCGAGGTGG TGAAGGCCTA CAAGGATGCG GGGATCGATT ACCAGTCCTC ACTGAATACC GGTCTGCAGA AGGGCATGAA CGTCATCGAG GCGTCCATGG CCCTGGCCAT GAGGTACGTC GAGGCCACTG ACCCGGCAAA GGCAAAGAAG ATCGAGGCCG CCAAGGCCAA AATCGACAAG GAAGTCGACC CGGAAAAAGC CAAGGCAGCG CTGGATGCCC TGGAAAAGGC CCTGCGCACT GGCGATATCT TCGCTGACAT GCAGGTCAAG GCCGCGCTCA CAGCCTACGG GCAAAACCGG GGCTTGTATG AGGAGCTCAA AGCCGACTCG CAGAAAGCCT CGGGCATCCT CGATAAGAAC CTTGCTGAGC GCCGAGAGAC CTCTGCGCAG CAGTGGGCCG AGCTGGGGCA GGCGGTCAAC GACTCGATGC GCAGCATTGG CGATGCCATC CGCCCCGCGA CCGACCTGGT GGCCAAGGGG CTGACCTCGG TCGCGCATGG GATGACCTCC CTTGCGGACA ACTTCCAGCC GGTCGTATTG GGCATCGCCG GCATCACGGC GGCGGTTGTA GCGTTCATGA CCGCGTCCAG TGCACTGAAA ATCGGGCGGG GCGTATTCAA CATCGCTCGC GGGCGAAGCC TTGATCGCTT GGCCGGTCGC CCAGGGCGTA ATGACCGGGC GCCCATTGAA CTGCCGAAGA CGGGCAGTAG GGTGGTCGAT ACCGGTCTCG GCTTGCTGGG CAAGTTGTTC CCTGCGACGC AGCCGGAAGT GACATCCGCA AATGAACCGC AGGCCGGCGG CAATGACACC CAGCGCGTAT TTGTGGTTAA CGCCGATGCG TTCAACGGGA TCGGCAGCAG CGTTGCCAAT AGTGCCCCTG CCGCCCCTGC TCGGGGGAGT CGCAGAAGCC GACGTCGTGC CCGTCGACGC GAGAGCAGGC AAAGCGCCAC AGCCCGGCCG AAGCAGGTGG TGGGGCAGAC AAAGCTTCCA TCCGTACGGC CCGCTATCCC TGCGTCTGTA CCTGCGGCTC TACCGAAAGC GGTGACCGGT GTTGAGGAGT TGGGCAGGGT CGCTCGCTCG GTGCGTGGCG TTACCCGTCT TGCCAAGCGA TTGCCTGGCG GGAATGTGGT TGATGTCGGC GCTGCCGCGA TTGATGTCGC GATCAATGCC AGCTCTCAGG AAGAGAAAGC GGAAGGTTAT GGGGGCGCGG CCGGCAGTCT CGCAGGGACT CTCGCGGGCG CCGCTGCAGG GGCGGCCATC GGTTCGGTAG TGCCAGTTAT TGGTACTGCA GTGGGTGGTG CTGTCGGCGC CGTGCTTGGC GGCATGGGTG GCGAATCGCT GGGCAGTTGG CTGGGTAAAC GCTGGTTTGG TGACGAGCAA ACTGATGCGG AGGACAAGCC AACGCCGGAA AGCCCGCAGA TGCCGGGGCA GGCTTTGCAG GCCACGGTGC TCCATGCGGA GGAAGACAAG CCGGAAGGCA GGGCAGAGCA GCCGCCACCA TTGCCTGCAG CGCCGGTACC GGCATTGGGT GAGACCGTGC GCAACGTACC GGCCCCAACG CCTATCGCGC CCGTAGTGGC ATACGATCCC CTCAGCCCCG GTGCAAAAGA TCCGTACCTG TTGCCCACGT TGACAGACAA CAAGGTCCCT TTCCCGGGTG CGCCCTTGGT GCGGCCGCCG GTTCAGCCTG AACCGGTGCC CGAGCCTCAG CGAGCATCAA TGCGGCAGGA GCCGCCGAAG CTGGGTGACA CGGTAAAAGC CATGGCGCCT CCGCCACCTG CCGCTCCAGC AGTGTCATAT GACCCGCTCG ATCCGGGGGC GAAGGACCCG TACCTGTTGC CGGCTCTGAC GGCGAGCAAA GTACGCTTCC CTGGTGCGCC CCTGGTGCGG CCGCAGGTTC AACCCGAGCC AGTGCCTGAG CCGGAACCGG CACCAAAGGA GCCGCCGAAG CTGGGTGGCA CGGTGAGAGC CGCAGCCGCT CCGGCAGTGT CGTACGACCC GCTCGGCCCT GAGGCCAAGG ATCCATACCT GTTGCCGGCG CTGACGGCCA ACAAAGTACG TTTTCCGGGT GCGCCCCTGG TGCGGCCGAC GGTTCAACCG GAGTCCGTGC CCGAGCCTGA GCCAGGTCCC CTGCTGCAGG AGCCGCCGCG GTTGGGCGAC ACAGTGCGAG CGTTGGCCGC CCCGCCACCG GTCGAGCCGG CTGCATCGTA TGACCCGGTC AATCCCGAGG CCAAGGACCC ATATCTGTTG CCGGCACTGA CGGCCAACAA GGTGCGATTC CCAGGTGAGC CCTTGGTGCG GCCGCCGGTA CAACCTGAGC CGGTGATCGA GTCTGAACCA GTGCCAGGGC TGCAGGAGCC GCTCAAGCTG GGTGACACGG TGAAAGCCGT GGCCGCTCCG GCGCCAGCCA CCCCATCAGT GTCATATGAT CCGCTTGAGC CGGGGTCCAA GGATCCGTAT CTGTTGCCGG CTCTGACGGC AAACAAGGTG CGCTTCCCTG GTGCAGGGCT GGTGCTACCA CCAGCTCAGC CGCAACCTGC GTCAGAAAAC CCTCCGACGA GACTGGGTGA GGCGGTGCGC GAGGCCCCAG CTACGTCGAC GCCGGCTCCA GTGAGCATCA ACAACCGCGA GCGCAAGCCT GCAGCTGCTG GTGTTTCACC TCAAGCGATT CCCCGGCCCG ATACCTTGCC GGCGGGGTTG GGGGACCTGG TACGCGACAT GGTGGCCAAA TCGGCGCCTG CCCCGCCCCG CATGCCCGAC CTTGTCCAGT CAGCCAAAGT CTCAGCGCCG CCCCCGGCTC CGAAGGTTGA ACAGTCGTTC ACCTTCGCGC CGAGTATTCC GATCAACGTC ACTGGCGATG TGAAGGACCC GGCGGAGCTA CTGCGCGAGC TGGAATCAGG TGTGAGGCGG CTGTTTGATG GCTGGCAGCG TGAGTTGTCT GCGCGCACGG CCTCGACCCA ATTGTTCGAT CAACCCCATG TGTAA
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Protein sequence | MAGKLALSLV IGGAVASSVG AAFKTVESGI QKLEAKGNRA KVLKSTIGET VKLREEWKRA HDSGAAGADK LLRKLDSNLD ALRKQGIEVG RLSREYQRLG REARAADLQL KGHQQLQAGK ESLKSNIGKA VVATGAAAVP TMISANYQAI IRDIAIKADI VNKPEERQLT RTVIDTAKDT GMSRNDVADL VNQLVGAGMD LDKALSYAPV AAKFAIGQGS SGVDTASMIQ ALQQNAKISD PKVMQQALEA IAYQGQAGSF EASDMAKWFP QLLAGMEKNG ITGLDAVTSL GSMLQVQMKT AGSSDEAANN FKNWMEKIGS GEVVKAYKDA GIDYQSSLNT GLQKGMNVIE ASMALAMRYV EATDPAKAKK IEAAKAKIDK EVDPEKAKAA LDALEKALRT GDIFADMQVK AALTAYGQNR GLYEELKADS QKASGILDKN LAERRETSAQ QWAELGQAVN DSMRSIGDAI RPATDLVAKG LTSVAHGMTS LADNFQPVVL GIAGITAAVV AFMTASSALK IGRGVFNIAR GRSLDRLAGR PGRNDRAPIE LPKTGSRVVD TGLGLLGKLF PATQPEVTSA NEPQAGGNDT QRVFVVNADA FNGIGSSVAN SAPAAPARGS RRSRRRARRR ESRQSATARP KQVVGQTKLP SVRPAIPASV PAALPKAVTG VEELGRVARS VRGVTRLAKR LPGGNVVDVG AAAIDVAINA SSQEEKAEGY GGAAGSLAGT LAGAAAGAAI GSVVPVIGTA VGGAVGAVLG GMGGESLGSW LGKRWFGDEQ TDAEDKPTPE SPQMPGQALQ ATVLHAEEDK PEGRAEQPPP LPAAPVPALG ETVRNVPAPT PIAPVVAYDP LSPGAKDPYL LPTLTDNKVP FPGAPLVRPP VQPEPVPEPQ RASMRQEPPK LGDTVKAMAP PPPAAPAVSY DPLDPGAKDP YLLPALTASK VRFPGAPLVR PQVQPEPVPE PEPAPKEPPK LGGTVRAAAA PAVSYDPLGP EAKDPYLLPA LTANKVRFPG APLVRPTVQP ESVPEPEPGP LLQEPPRLGD TVRALAAPPP VEPAASYDPV NPEAKDPYLL PALTANKVRF PGEPLVRPPV QPEPVIESEP VPGLQEPLKL GDTVKAVAAP APATPSVSYD PLEPGSKDPY LLPALTANKV RFPGAGLVLP PAQPQPASEN PPTRLGEAVR EAPATSTPAP VSINNRERKP AAAGVSPQAI PRPDTLPAGL GDLVRDMVAK SAPAPPRMPD LVQSAKVSAP PPAPKVEQSF TFAPSIPINV TGDVKDPAEL LRELESGVRR LFDGWQRELS ARTASTQLFD QPHV
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