| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1069 |
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| Symbol | trmD |
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| ID | 5868828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1216117 |
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| End bp | 1216869 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641546168 |
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| Product | tRNA (guanine-N(1)-)-methyltransferase |
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| Protein accession | YP_001667313 |
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| Protein GI | 167032082 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
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| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.228607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTAACC TTTGCGTAGA CGTCATCACG TTGTTCCCCG AGATGTTCTC GGCCATCACG
GAGTACGGCA TTACCAGCCG CGCGGTGAAA CAGGGGTTGC TTCAGGTAAC TTGCTGGAAC
CCGCGGGACT ACACCACAGA TCGTCACCAC ACGGTAGATG ATCGGCCGTT TGGCGGTGGT
CCGGGCATGG TGATGAAAAT CAAGCCTCTG GAAGATGCCC TGGTTAGCGC CAGGCAAGCG
ACCGGAGCTG CGGCAAAGGT GATCTACCTT TCGCCACAAG GCCGCAAGCT GACTCAGCAG
GCGGTCAAAG GCCTGGCCGA ACAGGAATCG TTGATCCTGA TCGCCGGTCG TTATGAAGGC
ATCGACGAGC GCTTTATCGA GGCTCATGTC GATGAGGAGT GGTCGATTGG CGACTATGTG
CTTTCCGGTG GCGAGCTGCC GGCCATGGTA CTGATCGATG CGGTTACGCG GCTGCTGCCC
GGAGCTTTAG GGCATGTGGA CTCGGCGGAA GAAGATTCCT TCACCGACGG TCTGCTCGAT
TGCCCGCACT ACACCCGACC TGAGGTGTAT GCGGATCAGC GTGTTCCCGA CGTGTTGCTA
AGTGGCAACC ATGCACATAT CCGGCGTTGG AGGATGAAGC AGTCCCTTGG TAGGACCTTC
GAACGACGCG CCGATCTTCT GGAAAGTCGC TCGCTTTCTG GAGAAGAGAA GAAGCTGCTC
GAGGAATATC TCCGCGAGCG GGACGATAGT TAA
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| Protein sequence | MGNLCVDVIT LFPEMFSAIT EYGITSRAVK QGLLQVTCWN PRDYTTDRHH TVDDRPFGGG
PGMVMKIKPL EDALVSARQA TGAAAKVIYL SPQGRKLTQQ AVKGLAEQES LILIAGRYEG
IDERFIEAHV DEEWSIGDYV LSGGELPAMV LIDAVTRLLP GALGHVDSAE EDSFTDGLLD
CPHYTRPEVY ADQRVPDVLL SGNHAHIRRW RMKQSLGRTF ERRADLLESR SLSGEEKKLL
EEYLRERDDS
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