Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1007 |
Symbol | |
ID | 5868767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1147782 |
End bp | 1148294 |
Gene Length | 513 bp |
Protein Length | 170 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641546108 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001667253 |
Protein GI | 167032022 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCAGT CCCGGTTCAA CTCCGTCTTC CTCGTCCAGC GCCTTACCCT GCTGCGTACC CTGCAGCGCA TGGTCGGCAA CCCCAGCACG GCCGAAGACC TGCTGCAGGA AACCTACCTG CGGGTATCCC GTGCCCTGGG CGAGCGGCCC ATCGAGCACA TCGAGCCGTT CGTGTTCCAG ACCGCGCGCA ACCTGGCGCT GGACCACCTG CGCGCACGCC GGGTGCAGGC GCGCATGCTG GTCGACGATG TGCCCGACGA AGTGCTGCAC AGCGTAGCCG CTCCCGCCAC CAGCAGCGAG GATGCCGCCC ATGCCGAGCA GTTGCTCAAG CACCTGAGCA TCAGCCTCAA TCAGCTAAGC GAGCGCCAGC AACGCATTTT CATCCTCAGC CGCCTGCATG GCGCCACCTA CCTGGAAATT GCCGAACAAC TGAGTGTTTC GCCCAGCACG GTACAAAAGG AATTGAAACT GATCATGGCG ATCTGCATGG GTGTTGCCGA GCGCCTCAAG TGA
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Protein sequence | MSQSRFNSVF LVQRLTLLRT LQRMVGNPST AEDLLQETYL RVSRALGERP IEHIEPFVFQ TARNLALDHL RARRVQARML VDDVPDEVLH SVAAPATSSE DAAHAEQLLK HLSISLNQLS ERQQRIFILS RLHGATYLEI AEQLSVSPST VQKELKLIMA ICMGVAERLK
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