Gene PputGB1_1007 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_1007 
Symbol 
ID5868767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp1147782 
End bp1148294 
Gene Length513 bp 
Protein Length170 aa 
Translation table11 
GC content63% 
IMG OID641546108 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001667253 
Protein GI167032022 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTCAGT CCCGGTTCAA CTCCGTCTTC CTCGTCCAGC GCCTTACCCT GCTGCGTACC 
CTGCAGCGCA TGGTCGGCAA CCCCAGCACG GCCGAAGACC TGCTGCAGGA AACCTACCTG
CGGGTATCCC GTGCCCTGGG CGAGCGGCCC ATCGAGCACA TCGAGCCGTT CGTGTTCCAG
ACCGCGCGCA ACCTGGCGCT GGACCACCTG CGCGCACGCC GGGTGCAGGC GCGCATGCTG
GTCGACGATG TGCCCGACGA AGTGCTGCAC AGCGTAGCCG CTCCCGCCAC CAGCAGCGAG
GATGCCGCCC ATGCCGAGCA GTTGCTCAAG CACCTGAGCA TCAGCCTCAA TCAGCTAAGC
GAGCGCCAGC AACGCATTTT CATCCTCAGC CGCCTGCATG GCGCCACCTA CCTGGAAATT
GCCGAACAAC TGAGTGTTTC GCCCAGCACG GTACAAAAGG AATTGAAACT GATCATGGCG
ATCTGCATGG GTGTTGCCGA GCGCCTCAAG TGA
 
Protein sequence
MSQSRFNSVF LVQRLTLLRT LQRMVGNPST AEDLLQETYL RVSRALGERP IEHIEPFVFQ 
TARNLALDHL RARRVQARML VDDVPDEVLH SVAAPATSSE DAAHAEQLLK HLSISLNQLS
ERQQRIFILS RLHGATYLEI AEQLSVSPST VQKELKLIMA ICMGVAERLK