Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0920 |
Symbol | |
ID | 5868680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 1055434 |
End bp | 1056258 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641546021 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001667166 |
Protein GI | 167031935 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.100818 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.609356 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACTATC TCCCAATGAC CGCCACCGCC CTTCCTGACG GCCCCGAGCA AACCCCGCTC ACCGCCGACA CCGTGCTGCG CTACCACCTG TGCTGGAAGC ACCGCGACCT CGACGGCGTC ATTGCGCTGT ACCACCCCGA CATCCAGTAC CACGACTTCT TCCAGAACCG CGTGCTCGGC TACCAGGCGC TGCGCGACTA CGTACGCGCC TGCCTGCCCC ACGAAGCCGG CGAAGACATC GTCCACAGCG ACCGCATCCG CGTCGATGGC TGCACCGCGT TCATCCAGTA CCAGGTCACA GTCCAGGGCG GCGACGGCCT GGTGGCGTTC CAGTCCAGCG AAGCCATCAC CGTCAAAGAC GGGCTGATCT GGCGGGTCAA CGAATACGCC ACGCTTGTTC GCCAGAACGG CAGCGGCCAC GCCGGCAGCG GCCCACGCCC GGCCACCAGC CGCCTGGGCC TGTCACCCCG GCAGTTGTCG ACCATGGCCC AGGACCTGGA GCACTACTTC CAGCGCCAGC GCCCCTACCT GGACCCGGAG CTGGACCTGC AGCAAGTGGC CGACGCCAGT GGCTATAGCC GCAACCAAAT CTCCTACCTG CTGAACCAAG TGCTGGGGCA AAGCTTCTAC CGCTACGTCA ACCAGGCCCG CCTGCAGCAC CTGATGGCCA GCCTCGACGA CGACCGCGTC GAGGCGACGA TCGACGAGCT GGCGTTCAGC GCCGGCTTCA ACTCGCTGTC AGCGTTCTAC AAGTGCTTCC GTGAACACAC CGGGCTCACG CCCAAGGCCT ACCTGAAGCA AATTTCCCTG CGTGCACGCA CGTAA
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Protein sequence | MHYLPMTATA LPDGPEQTPL TADTVLRYHL CWKHRDLDGV IALYHPDIQY HDFFQNRVLG YQALRDYVRA CLPHEAGEDI VHSDRIRVDG CTAFIQYQVT VQGGDGLVAF QSSEAITVKD GLIWRVNEYA TLVRQNGSGH AGSGPRPATS RLGLSPRQLS TMAQDLEHYF QRQRPYLDPE LDLQQVADAS GYSRNQISYL LNQVLGQSFY RYVNQARLQH LMASLDDDRV EATIDELAFS AGFNSLSAFY KCFREHTGLT PKAYLKQISL RART
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