Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0608 |
Symbol | |
ID | 5868354 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 688929 |
End bp | 690287 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641545696 |
Product | response regulator receiver modulated diguanylate cyclase |
Protein accession | YP_001666855 |
Protein GI | 167031624 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0597995 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAG CAGTCGAGCC GAGCCCGCAA TGCCCCGTGC AACAGCTGAC GCGTAACGGC CTGCGCAAGG ACGACCCGCT CGACCCACTG CTGCTGCCGC CCCCACGCAA ACCGGTGTAC ATCCTGCTGC AGGATCATGA GCGTGCCCAG CGGTTGGCCC AGCAACTGGA GTTCTTCGGC CTGGTGGTGC AAGCACTGCC CAATGCTACG GCGTTTCTCG CCTCGATCTG CGAGTACCCG CCTTCGGCCA TCATCATGGA TGTCGACTTC ACCGGTACGG GCCAAGGCCT GCAGCTGGCC GCCCAGGTGC AGCAAGGGTT GGCGCGACAT ATTCCGCTGC TGTTCTTCAG CCACCACGAA GCCGACACCC CAACCCGCCT TGCCGCCGTA CGCGCCGGTG GCCAGGACTT TCTCACCGGC AGCCTGGAGG CTTCCAGCCT GCTGGAAAAG GTCGAACTGC TGACCAATGC CACCCCGCAC GACCCGCTGC GCGTGCTGAT CATCGACGAC TCGCGCACCC AGGCCCTGTA CACCGAGCGG GTGCTGGCCG GCGCCGGCAT GGTCACCCGC AGCCTGACCG ACCCGATCCG TACCATGGCC GAGCTTGCCG ACTTCCAGCC CGACCTGATC ATCCTCGACC TGTACATGCC AGCCTGCACC GGCCCGGAAC TGGCCAAGGT GATTCGCCAC AGTGACCGTT ATGTGAGCGT GCCGATCATC TACCTGTCAG CCGAGGACGA CCTGGACAAG CAGCTGGATG CCATGAGCGA AGGCGGTGAT GACTTTTTGA CCAAACCCTT TCGCTCACGT CACCTGATCA CCACCGTGCG CAACCGCGCC GCCCGCGCCC GGCACTTGAA GGCGCGCATG GTGCGCGACA GCCTGACCGG GCTGTACAAC CACACCCACA TCCTGCAACT GCTGGAAGAC TGCAGCTTCC GCGCCCGCCG CGAACAGCAG CCGTTGAGCT TTGCCATGCT CGATATCGAC CACTTCAAAA AGATCAACGA CCGCCACGGC CACCCCATGG GCGATCGGGT GATCAAGAGC CTGGCGTTGT TCCTCAAGCA GCGCTTGCGC AAGACCGATT TCATTGGCCG CTATGGTGGC GAAGAGTTCG CCATCGTCAT GCCCAATACC GCGCTGGACG CGGCACACAG GGTACTGGAC GAAATTCGCC GGCGCTTTGC CGAGATTCTC TACCCGGCGC AGCCACGGGA TTTGCAGTGC ACCTTCAGTG CCGGAGTCGT ACAGCTGGAC GAGGGGCTGG ATGCACTGAC CATGGCCAGT GCGGCGGACG AAGCGCTGTA CCGGGCCAAG CACGCGGGGC GCAATTGCGT AGTGCGTGTA GAGCCCTAA
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Protein sequence | MSKAVEPSPQ CPVQQLTRNG LRKDDPLDPL LLPPPRKPVY ILLQDHERAQ RLAQQLEFFG LVVQALPNAT AFLASICEYP PSAIIMDVDF TGTGQGLQLA AQVQQGLARH IPLLFFSHHE ADTPTRLAAV RAGGQDFLTG SLEASSLLEK VELLTNATPH DPLRVLIIDD SRTQALYTER VLAGAGMVTR SLTDPIRTMA ELADFQPDLI ILDLYMPACT GPELAKVIRH SDRYVSVPII YLSAEDDLDK QLDAMSEGGD DFLTKPFRSR HLITTVRNRA ARARHLKARM VRDSLTGLYN HTHILQLLED CSFRARREQQ PLSFAMLDID HFKKINDRHG HPMGDRVIKS LALFLKQRLR KTDFIGRYGG EEFAIVMPNT ALDAAHRVLD EIRRRFAEIL YPAQPRDLQC TFSAGVVQLD EGLDALTMAS AADEALYRAK HAGRNCVVRV EP
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