| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0505 |
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| Symbol | rpsM |
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| ID | 5868251 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 579214 |
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| End bp | 579570 |
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| Gene Length | 357 bp |
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| Protein Length | 118 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641545593 |
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| Product | 30S ribosomal protein S13 |
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| Protein accession | YP_001666752 |
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| Protein GI | 167031521 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0099] Ribosomal protein S13 |
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| TIGRFAM ID | [TIGR03631] 30S ribosomal protein S13 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.00137785 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCCCGTA TTGCAGGCGT CAACATTCCA GATAACAAGC ATACTGTTAT CTCGCTGACC
TACATCTATG GTGTCGGTCG CACAACTGCA CAGAAGATCT GTGCAGACGC TGGTGTAAAT
CCAGCCGCTA AGATCAAGGA TCTGAGCGAC GAGCAAATCG AAACCCTGCG TGGCGAAGTT
GCGAAGTTCA CCACCGAAGG TGACCTGCGT CGTGACATCA ACATGAAGAT CAAGCGCTTG
ATGGACCTGG GTTGCTACCG CGGCCTGCGT CATCGTAAAG GTCTGCCGGT TCGCGGTCAG
CGCACCAAGA CCAACGCACG CACCCGTAAG GGCCCGCGTA AGCCGATCCG CAAGTAA
|
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| Protein sequence | MARIAGVNIP DNKHTVISLT YIYGVGRTTA QKICADAGVN PAAKIKDLSD EQIETLRGEV
AKFTTEGDLR RDINMKIKRL MDLGCYRGLR HRKGLPVRGQ RTKTNARTRK GPRKPIRK
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