| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0485 |
|---|
| Symbol | rplD |
|---|
| ID | 5868231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 569419 |
|---|
| End bp | 570021 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641545573 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_001666732 |
|---|
| Protein GI | 167031501 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.00632251 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTTA ATGTAAATGA CGCTCAGGCG ATCGAAGTTT CCGAACTGAC TTTCGGTGGC
GAATTCAACG AGACGCTGGT TCACCAAGCA GTCGTGGCCT ACATGGCCGG CGGCCGTCAG
GGTACCAAGC AGCAGAAGAC CCGTTCCGAC GTGGCTGGTG GCGGTAAGCG CCCATGGCGT
CAGAAGGGTA CTGGTCGTGC TCGTGCTGGT ACCACTCGTG GTCCGATCTG GCGTGGCGGT
GGTGTAACCT TCGCAGCTCG CCCTCAAGAT CACTCGCAAA AGCTCAACAA GAAGATGTAC
CGCGCAGCTC TGCGCTCCAT CCTCGCTGAG CTGGTGCGTA GCGACCGTCT GGTCGTGGTT
CAGGACTTCG CTGTTGAAGC ACCGAAAACC AAAGATCTGC TGAACAAGCT GAACGGCATG
GGTCTGAGCG ACGTACTGAT CGTCTCCGAC GCTGTTGATC AGAACCTGTA CCTGGCTGCT
CGCAACCTGC CGCACGTCGA CGTACGTGAC GTACAGGGTT CCGACCCGGT CAGTCTGATC
GCATACGAGA AAGTGTTGAT CACTGTCTCG GCCGTGAAGA AATTCGAGGA GCTGCTGGGA
TGA
|
|---|
| Protein sequence | MQLNVNDAQA IEVSELTFGG EFNETLVHQA VVAYMAGGRQ GTKQQKTRSD VAGGGKRPWR
QKGTGRARAG TTRGPIWRGG GVTFAARPQD HSQKLNKKMY RAALRSILAE LVRSDRLVVV
QDFAVEAPKT KDLLNKLNGM GLSDVLIVSD AVDQNLYLAA RNLPHVDVRD VQGSDPVSLI
AYEKVLITVS AVKKFEELLG
|
|---|
| |