Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0466 |
Symbol | |
ID | 5868205 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 540864 |
End bp | 542063 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641545547 |
Product | tyrosyl-tRNA synthetase |
Protein accession | YP_001666713 |
Protein GI | 167031482 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0162] Tyrosyl-tRNA synthetase |
TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000000000141551 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 0.218715 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTCGG TTGAAGAGCA GCTGGCGCTT ATCAAGCGCG GTGCGGAAGA AGTACTGGTC GAGTCGGAAC TGGTGGAGAA GCTCAAGCGC GGCCAGCCTC TGCGCATCAA GGCCGGCTTC GATCCGACCG CACCTGACCT GCACCTTGGC CATACGGTGC TGATCAACAA GCTGCGCCAG TTCCAAGAAC TGGGTCATCA GGTCATCTTC CTTATAGGTG ACTTCACCGG CATGATCGGC GACCCCAGCG GCAAGAGTGC CACGCGCCCG CCGCTGACTC GCGAGCAGGT GCTGGACAAT GCCGAGACCT ACAAGCAGCA GGTGTTCAAG ATCCTCGACC CGGCCAAGAC CGAGGTCGCG TTCAACTCCA CCTGGATGGA CAAGCTGACC CCAGCCGACT TCATTCGCCT TGCGTCGCAA TATACCGTTG CGCGCATGCT CGAGCGTGAT GACTTCGACA AGCGTTACAC CACCAACCAG CCGATTGCCA TCCACGAGTT CCTCTACCCG CTGGTGCAAG GCTACGACTC GGTGGCGCTG AAGGCGGACG TCGAGCTGGG TGGCACCGAC CAGAAGTTCA ACCTGTTGAT GGGGCGCGAG CTGCAGCGCG CCTATGGCCA GGAAGCGCAG AACATCGTCA CCATGCCGCT GCTCGAGGGG CTTGATGGCG TGAAGAAGAT GTCGAAGTCG CTGGGTAACT ATGTAGGTAT CCAGGAAGCG CCGGGGGTTA TGTACGGCAA GCTGGTATCG ATTCCCGATA CCCTGATGTG GCGCTACTTC GAGCTGCTGA GCTTCCGTTC GATGGAGGAG ATCGAGCAGT TCCGTGCCGA CGTCGCCAAG GGTGCCAACC CGCGGGACAT CAAGATCAAG CTGGCAGAAG AGATCGTTGC GCGCTTCCAT GGTGAAGAGG CTGCCGCCAA TGCTCACCGT GCTGCGGGTA ACCGCATGAA GGAAGGCGAG CTGCCGGAAG ACCTGCCGGA GATCGAAGTG GCTGCGTCGG AAGACCTGCC GATCGCTGCC GTGCTGAACC GGGCTGGCCT GGTGAAGAAC TCGGCACAGG CGCGTGACTT GCTGAATGGC GGTGCGGTGA AGGTTGATGG TGCGGTGGTC GACAAGGACT TCATGTTTGT CCTCGGTGCT ACTCACGTGT GCCAGGCGGG GAAGAAGTCG TTTGGCCGGG TTACCCTTAA GGCCGAGTGA
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Protein sequence | MKSVEEQLAL IKRGAEEVLV ESELVEKLKR GQPLRIKAGF DPTAPDLHLG HTVLINKLRQ FQELGHQVIF LIGDFTGMIG DPSGKSATRP PLTREQVLDN AETYKQQVFK ILDPAKTEVA FNSTWMDKLT PADFIRLASQ YTVARMLERD DFDKRYTTNQ PIAIHEFLYP LVQGYDSVAL KADVELGGTD QKFNLLMGRE LQRAYGQEAQ NIVTMPLLEG LDGVKKMSKS LGNYVGIQEA PGVMYGKLVS IPDTLMWRYF ELLSFRSMEE IEQFRADVAK GANPRDIKIK LAEEIVARFH GEEAAANAHR AAGNRMKEGE LPEDLPEIEV AASEDLPIAA VLNRAGLVKN SAQARDLLNG GAVKVDGAVV DKDFMFVLGA THVCQAGKKS FGRVTLKAE
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