Gene PputGB1_0380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0380 
Symbol 
ID5868118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp443553 
End bp444071 
Gene Length519 bp 
Protein Length172 aa 
Translation table11 
GC content67% 
IMG OID641545460 
ProductRNA polymerase sigma factor 
Protein accessionYP_001666627 
Protein GI167031396 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.30331 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.23383 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCTTCTG CACAGAGCCC ACACGCCGAT CTGGTCGATT CGCTGTACCG CGACCATCGC 
GGCTGGCTGC TCGCCTGGCT GCAACGCAGC ATGGCCTGCC GCCAACGTGC CGAAGACCTG
AGCCAGGACA CCTTCGTGCG CCTGCTGGGC CGCGAGCGAC TGGACACACC CCGCGAACCC
CGCGCCTTTC TCGCCGCCGT GGCCAAGGGG CTGATGTTCG ACCACTTTCG CCGCGCCGCG
CTGGAACAGG CCTACCTGGC CGAGCTGGCG CTGATCCCGG AAGCCGAACA CCCCTCGCCA
GAAGTGCAGC ACCTGATCCT CGAAGACCTC AAGGCCATCG ACCGCCTGCT CGGCAAGCTG
TCGAGCAAGG CCCGCGCGGC GTTCCTGCAT AACCGGCTGG ACGGCATGGG CCATGCCGAA
ATCGCCGAGC GCCTGGGCGT TTCGGTATCG CGTGTGCGCC AGTACATCGC CCAAGGCATG
CGCCAGTGCT ACGTGGCCCT GTACGGGGAG CCGACGTGA
 
Protein sequence
MSSAQSPHAD LVDSLYRDHR GWLLAWLQRS MACRQRAEDL SQDTFVRLLG RERLDTPREP 
RAFLAAVAKG LMFDHFRRAA LEQAYLAELA LIPEAEHPSP EVQHLILEDL KAIDRLLGKL
SSKARAAFLH NRLDGMGHAE IAERLGVSVS RVRQYIAQGM RQCYVALYGE PT