Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0380 |
Symbol | |
ID | 5868118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 443553 |
End bp | 444071 |
Gene Length | 519 bp |
Protein Length | 172 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641545460 |
Product | RNA polymerase sigma factor |
Protein accession | YP_001666627 |
Protein GI | 167031396 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.30331 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 0.23383 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGTCTTCTG CACAGAGCCC ACACGCCGAT CTGGTCGATT CGCTGTACCG CGACCATCGC GGCTGGCTGC TCGCCTGGCT GCAACGCAGC ATGGCCTGCC GCCAACGTGC CGAAGACCTG AGCCAGGACA CCTTCGTGCG CCTGCTGGGC CGCGAGCGAC TGGACACACC CCGCGAACCC CGCGCCTTTC TCGCCGCCGT GGCCAAGGGG CTGATGTTCG ACCACTTTCG CCGCGCCGCG CTGGAACAGG CCTACCTGGC CGAGCTGGCG CTGATCCCGG AAGCCGAACA CCCCTCGCCA GAAGTGCAGC ACCTGATCCT CGAAGACCTC AAGGCCATCG ACCGCCTGCT CGGCAAGCTG TCGAGCAAGG CCCGCGCGGC GTTCCTGCAT AACCGGCTGG ACGGCATGGG CCATGCCGAA ATCGCCGAGC GCCTGGGCGT TTCGGTATCG CGTGTGCGCC AGTACATCGC CCAAGGCATG CGCCAGTGCT ACGTGGCCCT GTACGGGGAG CCGACGTGA
|
Protein sequence | MSSAQSPHAD LVDSLYRDHR GWLLAWLQRS MACRQRAEDL SQDTFVRLLG RERLDTPREP RAFLAAVAKG LMFDHFRRAA LEQAYLAELA LIPEAEHPSP EVQHLILEDL KAIDRLLGKL SSKARAAFLH NRLDGMGHAE IAERLGVSVS RVRQYIAQGM RQCYVALYGE PT
|
| |