| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0270 |
|---|
| Symbol | |
|---|
| ID | 5867967 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 316897 |
|---|
| End bp | 319221 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641545350 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001666519 |
|---|
| Protein GI | 167031288 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2183] Transcriptional accessory protein |
|---|
| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACAGCA TCAACAGCCG TATCGCCGAG GAACTGGGCG TACGCCCCCA GCAGGTCGAG
GCGGCCGTGG GCCTGTTGGA CGAAGGCTCG ACCGTGCCCT TCATCGCCCG TTACCGCAAG
GAAGTGACCG GTAGCCTGGA CGATACCCAG TTGCGCCATC TGGAAGAACG CCTGCGCTAC
CTGCGCGAAC TCGACGAGCG CCGCGCCAGC ATCCTGTCCA GCATCGAGGA GCAGGGCAAG
CTGACCCCGG AACTGGCCCG CGAGATCAAG CTGGCCGACA CCAAGACGCG CCTCGAAGAC
CTGTACCTGC CGTACAAGCA GAAGCGTCGC ACCAAGGGCC AGATCGCCCT GGAAGCCGGC
CTTGGCGAGC TGGCCGACGG CCTGTTCAAC GACCCGACCC TGGCACCGGA AAGCGAAGCC
GCACGCTTCG TCGACGCCGA AAAGGGCGTG GCCGACGTCA AGGCGGCACT GGAAGGCGCC
AAGTACATCC TGATGGAGCG CTTTGCCGAA GACGCCGCCC TGCTCGACAA GCTGCGCAGT
TTCCTCAAGC AGGAAGCCGT GCTCAGCGCC CGCCTGGTGG CCGGCAAGGA AGAAGAAGGC
GCCAAGTTCC GCGATTACTT CGCCCACGAC GAACTGCTGC GCACTGCGCC GTCGCACCGT
GCGCTGGCCA TCTTCCGCGG GCGCAATGAA GGTGTTTTGA GCGCATCGCT CAAGGTCGGC
GAAGAGCTGC CCGGTACCCT GCACCCATGC GAACTGATGA TCGGCAGCCA CGTCGGCATC
GAAAACCGCG GCCGCCCGGC CGACAAGTGG CTGGGCGAAG TGGTGCGCTG GACCTGGAAG
GTCAAGCTGT ATACCCACCT GGAAACCGAC CTGTTCGGCG AGCTGCGGGA CAACGCCGAA
GGCGAAGCGA TCAACGTGTT CGCCCACAAC CTGCACGACC TGCTGCTGGC CGCCCCGGCT
GGCCCACGTG CTACCCTGGG CTTCGACCCG GGCCTGCGCA CAGGCTGCAA GATCGCCGTG
GTCGATGCCA CCGGCAAGCT GCTGGACTAC ACCACGGTCT ACCCGCACGC GCCGAAGAAC
GACTGGGACC GCACCCTTTC CGTCATGGCC GCACTGTGCG CCAAGCACTC GGTGGAACTG
ATCGCTATCG GCAACGGCAC CGCCAGCCGT GAAAGCGACA AGCTGGTGGC CGAGCTGGTT
AAAAAATACC CAGCACTGAA GATCACCAAG ATCATGGTCT CCGAAGCCGG CGCGTCGGTG
TATTCGGCCT CGGAACTGGC CGCCCGCGAG TTCCCGGACC TGGACGTGTC GATCCGTGGT
GCCGTGTCGA TTGCTCGCCG CCTGCAGGAC CCGCTGGCCG AGCTGGTGAA GATCGACCCG
AAATCCATCG GTGTCGGCCA GTACCAGCAC GACGTGTCCC AGCTGAAACT GGCGCGTGGC
CTGGACGCCG TGGTCGAGGA CTGCGTGAAC GCCGTGGGTG TGGACGTGAA CACCGCCTCG
GTGGCGCTGC TGACCCGTAT CTCCGGCCTC AACGCCACGC TGGCACAGAA CATCGTTGCC
CACCGCGATG CCAACGGCCC CTTCGCCACC CGTGCAGCGC TGAAAAAGGT CAGCCGCCTG
GGTGAAAAAA CCTTCGAGCA AGCCGCCGGC TTCCTGCGTG TGATGAACGG CGACAACCCG
CTGGACGCCT CTGCGGTGCA CCCTGAGGCC TACCCGCTGG TGCAGCGCAT CGCCGCCGAC
ACCGAGCGCG ACATTCGCTC GCTGATTGGC GACAGCAGCT TCCTCAAGCG TTTGGACCCG
AAGAAGTTCA CCGACGAGTC CTTCGGCCTG CCGACCGTCA CCGACATCCT GCAAGAGCTG
GACAAGCCTG GTCGCGACCC ACGCCCCGAG TTCAAGACCG CCACCTTCCA GGACGGCGTC
GAAGACCTCA AGGACCTCGA ACCCGGCATG ATCCTGGAAG GCGTGGTGAC CAACGTCACC
AACTTCGGCG CCTTCGTCGA CATCGGTGTG CACCAGGACG GCCTGGTACA CATCTCGGCA
CTGTCGGAGA AGTTCATCAA AGACCCGCGT GAAGCGGTCA AGGCCGGCGA TGTGGTCAAG
GTCAAAGTCA TGGAAGTGGA TATCCCGCGC AAGCGCGTCG GCCTGTCCAT GCGCATGAGC
GACACCCCCG GCGAAAAGGT CGAAGGCAAC CGTGGCGGCA ATCGTGGCAA TGGCGGCAAC
CGCCAGCAGC AGGCCCCGCG CCAGCGTGAA ACCACCACTG CCGCACCGGC CAACAATGCC
ATGGCCTCCC TGTTCGCCAA CGCCAAGCAG TTGAAGAAGA AGTGA
|
|---|
| Protein sequence | MDSINSRIAE ELGVRPQQVE AAVGLLDEGS TVPFIARYRK EVTGSLDDTQ LRHLEERLRY
LRELDERRAS ILSSIEEQGK LTPELAREIK LADTKTRLED LYLPYKQKRR TKGQIALEAG
LGELADGLFN DPTLAPESEA ARFVDAEKGV ADVKAALEGA KYILMERFAE DAALLDKLRS
FLKQEAVLSA RLVAGKEEEG AKFRDYFAHD ELLRTAPSHR ALAIFRGRNE GVLSASLKVG
EELPGTLHPC ELMIGSHVGI ENRGRPADKW LGEVVRWTWK VKLYTHLETD LFGELRDNAE
GEAINVFAHN LHDLLLAAPA GPRATLGFDP GLRTGCKIAV VDATGKLLDY TTVYPHAPKN
DWDRTLSVMA ALCAKHSVEL IAIGNGTASR ESDKLVAELV KKYPALKITK IMVSEAGASV
YSASELAARE FPDLDVSIRG AVSIARRLQD PLAELVKIDP KSIGVGQYQH DVSQLKLARG
LDAVVEDCVN AVGVDVNTAS VALLTRISGL NATLAQNIVA HRDANGPFAT RAALKKVSRL
GEKTFEQAAG FLRVMNGDNP LDASAVHPEA YPLVQRIAAD TERDIRSLIG DSSFLKRLDP
KKFTDESFGL PTVTDILQEL DKPGRDPRPE FKTATFQDGV EDLKDLEPGM ILEGVVTNVT
NFGAFVDIGV HQDGLVHISA LSEKFIKDPR EAVKAGDVVK VKVMEVDIPR KRVGLSMRMS
DTPGEKVEGN RGGNRGNGGN RQQQAPRQRE TTTAAPANNA MASLFANAKQ LKKK
|
|---|
| |