| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0183 |
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| Symbol | |
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| ID | 5867880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 200331 |
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| End bp | 202277 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641545264 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001666434 |
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| Protein GI | 167031203 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 0.475151 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACTGT TCAAACAATT GCTGTTGGCC ATTTGCCTGT TCCTGGTGGT CGCCTTCAGT
GGCAGTTTCA TGGTCAGCCT GGAAAGCTCG CGCAGCCAGT ATGTCAACCA GTTGCGCTCG
CACGCCCAGG ACGCGGCGAC CGCGCTGGCG CTGTCGCTGA CGCCGAATAT CGACGACCCG
GCGATGGTCG AACTGATGGT TAGCTCGATC TTCGACAGTG GTTACTATGC AAGCATCAAG
GTCGTCGACC TGGGCTCCAA TGCTGTGCTG GTGGAGCGCC ACGCTGAGCC GGACCCAGGT
GGCGTACCGC GATGGTTCGT GCACTTGATC GGCCTTGAGG CTGCTGGTGG CGATGCCATC
GTCAGCCGTG GCTGGCAACA GGCCGCGCGC GTTGAAGTGA TCAGCCACCC GATGTTCGCC
ATTGCCAAAC TTTGGCAAAG TGCTCTGGGC AGCCTGGGTT GGTTGCTGTT GTGTGGTGCG
GCCAGTGCTG TGCTCGGTGC ATTGCTGTTG CGCCGCCAGT TGCGGCCGCT GGACTATATG
GTTGAGCAAT CCCACGCGAT TGCCCGCCGC GAATTCCTCA GCCTTCCAGA GCTGCCGCGC
ACGCCAGAGT TACGCCGTGT GGTGCAGGCG ATGAACCAGA TGGTCGAGAA ACTCAAAGCG
CTGTTCACCG AGCAGGCCGA GCGCAGTGAG CGGCTGCGTG CCGAGTCCTA CCAGGACAGC
CTGACCGGGC TGTCCAACCG CCGGTATTTC GAAATGCAAC TGAACACCCG GGTGAGCAAC
CTGGAAGAGG CGCGCGCCGG CTACCTGCTG TTGCTGCGGG TTCAGGGCCT GGCCGGCCTG
AATGCCCGCC TTGGCGGCCA GCGTACCGAC CAGTTGCTGC AGGCAGTAGG CGAACAGTTG
CGCCGCACCT GTGCAAGCTA CCCGGAAACC AATGACCTGA TTTCCCGCAG CCGCGGTGGC
GAGTTTGCCG TGCTGGCGCC GGGCATGGTG CATGAAGAGG CCGTGCAACT TGCCCAGGCC
CTGGAGGCGA CGCTGCAGAG CCTGCACGAA ACGGGTGCCA GTGATATCGA CCCGGTCGCT
TGTATCGGCC TGGCGCCGTT CAGCCCCGGT GACTCACCGC AGGCGTTGCT GAAACTCGCC
GACGAGGCGC TGGCCCGTGC CGAGAACCAG CCAACGCCGG GCTGGGTGTG CCTTGAACAA
GGCGTTGCCG CAGTGGCTGG GGACAGCCAA CATGCCTGGC ACGAGCGGCT CGATCAGGCA
TTCGGCAATG GGCATTTCGA GCTGTTCTTC CAGCCCGTGG TGGATTGTGC TTCAGCGCAA
CGGGTACTGC ACCACAAAGT GATTTCGCGT TTGCAGGATG GCCAGGGCGA GGCGTTGCCA
GCGGGCCGCT TCCTGCCCTG GTTGGAGCGC TTCGGCTGGA TGCCACGGCT GGATGTGCTG
GTGCTGGAGA AAGTGTTGGC GCACCTACGA GGGCACGACC AGGTGCTGGC GCTGAACCTG
TCCGCCGCCA CCCTGGCCGA CCCCAAGGCC CTGCAGCGCG TCTTCGAGCT GCTGGGCCAG
AACGCGGCGC TCGGCCCGCG GCTGGTTTTT GAAATTGGCG AGGAGCAGTT GCCTGAACAG
GCCGCCTTGG AGCAGCTCAC CCGGCGCCTG CACGGGCTTG GCTTCGGCCT GGCGCTGCAG
CGCTTTGGCG GGCGCTTCAG CATGATCGGC AACCTGGCGC ACCTGGGCCT GGCGTACCTG
AAGATTGACG GCAGCTACAT CCGCAACATC GACCATGAGC AGCACAAGCG GTTGTTCATC
GAAGCGATTC AGCGTGCGGC CCACAGCATC GATTTGCCGC TGATTGCCGA GCGGGTCGAG
ACCGAAGGGG AGCGGCGGGT GTTGCAGGAG ATGGGGGTAG GTGGGATTCA GGGCCAGCTG
GTTGGTGAGC CTGCGCCCTG GCGCTAA
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| Protein sequence | MSLFKQLLLA ICLFLVVAFS GSFMVSLESS RSQYVNQLRS HAQDAATALA LSLTPNIDDP
AMVELMVSSI FDSGYYASIK VVDLGSNAVL VERHAEPDPG GVPRWFVHLI GLEAAGGDAI
VSRGWQQAAR VEVISHPMFA IAKLWQSALG SLGWLLLCGA ASAVLGALLL RRQLRPLDYM
VEQSHAIARR EFLSLPELPR TPELRRVVQA MNQMVEKLKA LFTEQAERSE RLRAESYQDS
LTGLSNRRYF EMQLNTRVSN LEEARAGYLL LLRVQGLAGL NARLGGQRTD QLLQAVGEQL
RRTCASYPET NDLISRSRGG EFAVLAPGMV HEEAVQLAQA LEATLQSLHE TGASDIDPVA
CIGLAPFSPG DSPQALLKLA DEALARAENQ PTPGWVCLEQ GVAAVAGDSQ HAWHERLDQA
FGNGHFELFF QPVVDCASAQ RVLHHKVISR LQDGQGEALP AGRFLPWLER FGWMPRLDVL
VLEKVLAHLR GHDQVLALNL SAATLADPKA LQRVFELLGQ NAALGPRLVF EIGEEQLPEQ
AALEQLTRRL HGLGFGLALQ RFGGRFSMIG NLAHLGLAYL KIDGSYIRNI DHEQHKRLFI
EAIQRAAHSI DLPLIAERVE TEGERRVLQE MGVGGIQGQL VGEPAPWR
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