| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0176 |
|---|
| Symbol | |
|---|
| ID | 5867864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 181831 |
|---|
| End bp | 183051 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641545249 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001666428 |
|---|
| Protein GI | 167031197 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000000247826 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.235552 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCGC TATCACATCT GCGGGTGCTG GACCTTTCGC GCGTGTTGGC CGGCCCGTGG
TCTGGCCAGA TTCTCGCTGA CCTTGGCGCT GACGTGATCA AGGTCGAGCG CCCTGGCAGT
GGCGACGATA CCCGCTCATG GGGGCCACCC TTCCTCAAGG ATGTCGAGGG TGAGAACACC
GGCGAGGCGG CCTACTACCT GTCGGCCAAT CGCAACAAGC GTTCGGTGAC CATCGACTTT
ACCCAGCCCG AGGGGCAGCG CCTGGTGCGT GAGTTGGCGG CTAAGTGCGA TATCGTCATC
GAGAACTTCA AGGTGGGTGG GCTGGCTGCC TATGGCCTGG ACTACCAGAG CCTGAAGGCA
GTCAACCCAC AGCTTATCTA TTGCTCCATT ACGGGCTTCG GCCAGACCGG CCCATATGCC
AAGCGCGCTG GCTATGACTT CATGATCCAG GGGCTGGGTG GGCTGATGAG CCTGACCGGT
CGCCCGGAAG GTGAGGCAGG TGCAGGGCCG GTGAAGGTGG GTGTAGCGCT TACCGACATT
CTGACCGGGC TGTATTCCAC GGTTGCCATG CTTGCTGCCC TCGCCCACCG GGATCAGACC
GGGGTCGGCC AGCATGTCGA TATGGCATTG CTCGATGTGC AGGTGGCCTG CCTGGCGAAT
CAGGCAATGA ACTATCTGAC CACAGGCACC TCGCCTCGCC GGCTGGGTAA TGCGCATCCC
AACATAGTGC CTTATCAGGA TTTCCCGACG GCGGATGGCG ACTTCATTCT TACCGTGGGT
AATGACAGCC AGTTCCGCAA GTTCGCCGAA GTGGCCGGGC AGCCGCAATG GGCGGATGAC
CCGCGCTTTG TGACCAATAA ACTGCGGGTG GCGAACAGGG CCGAGCTGAT TCCACTGATA
CGCCAAGCCA CGGTGTTCAA GACCACGGCT GAATGGGTGC GCCAGCTGGA AGCTGCAGGG
GTGCCGTGTG GGCCAATCAA TGACCTGGCG CAGATGTTCC AGGACCCCCA GGTGCTGGCG
CGAGGGCTGG CGGTAAGTAT GGCGCATCCG TTGGCGGGTA GCGTACCGCA GGTCGCGAGC
CCGATACGCT TGTCGGAGAC GCCGGTGGAG TATCGCCGGG CGCCGCCACT GTTGGGCGAG
CATACCGACG TGGTGCTGGG GGAAGTGTTG GGGTTGGGTG CCGGCGAGCT GCAGCGACTA
CGCGGCGCTG GTGTACTTTA G
|
|---|
| Protein sequence | MGALSHLRVL DLSRVLAGPW SGQILADLGA DVIKVERPGS GDDTRSWGPP FLKDVEGENT
GEAAYYLSAN RNKRSVTIDF TQPEGQRLVR ELAAKCDIVI ENFKVGGLAA YGLDYQSLKA
VNPQLIYCSI TGFGQTGPYA KRAGYDFMIQ GLGGLMSLTG RPEGEAGAGP VKVGVALTDI
LTGLYSTVAM LAALAHRDQT GVGQHVDMAL LDVQVACLAN QAMNYLTTGT SPRRLGNAHP
NIVPYQDFPT ADGDFILTVG NDSQFRKFAE VAGQPQWADD PRFVTNKLRV ANRAELIPLI
RQATVFKTTA EWVRQLEAAG VPCGPINDLA QMFQDPQVLA RGLAVSMAHP LAGSVPQVAS
PIRLSETPVE YRRAPPLLGE HTDVVLGEVL GLGAGELQRL RGAGVL
|
|---|
| |