| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_0092 |
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| Symbol | |
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| ID | 5867780 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 99712 |
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| End bp | 100635 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641545165 |
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| Product | choline ABC transporter, periplasmic binding protein |
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| Protein accession | YP_001666344 |
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| Protein GI | 167031113 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000000000618181 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCACAAGT TCTCCGCCGC CGTGTTCGCC CTGGCCATAA GCACCGCCAC GGCCCACGCC
GCCGACAGCG ACGCGCAATG CAGTACCGTG AAAATGGCCG ACCCCGGCTG GAGCGATATT
GCCTCGACCA ACGCCGTCGC CCGCCTGTTA CTGGAAAGCC TGGGCTACCA GGTGAAAATC
GACAGCCTGG CCGTGCCAAT CATCTATGGC GGCCTGAAGG ACGGCCGCGT CGATGCCTTC
CTCGGCAACT GGATGCCGGC GCAGCAAGGC TTCCATGACA AGTTCATCGC CAACGGCGAT
GTGCAGCAGC TGTCGCGTAA CCTGGAGGGA ACCGAATTCA CTCTGGCAGT GCCCGACTAT
GTGTGGAATG CCGGGGTGAA GGACTTTGCC GACCTGCAGA AGCACGCCGA CCAGTTCGAC
AAGAAATTGT ACGGCATCGG CTCCGGCGCC CCGGCCAACC TGTCGTTGAA GGAAATCATC
GACAAGAATG AGTTCAACCT TGGCCAGTGG AAGCTGGTGG AGTCCAGCGA GCAGGCGATG
CTGGCCCAGG TCGACCGGGC GGTGAAGAAG CAGCAGTTCA TCACCTTCCT TGGCTGGACC
CCGCACCCGA TGAACGTGAA GTTGAAAATG CACTACCTGA CCGGCGGGGA AAAGTGGTTC
GGCAGCAAGG GCGAGGTGTA CACGCTGACC CGAAAGGGTT ATCCACAAGC CTGCCCGAAT
GCAGCGAAGC TGTTGGGTAA CCTTAAGTTC ACACTGGACA TGGAAAACTC CATCATGGCC
GAGGTTGTGG ATAAGAAGAT CAGCTTCGAT GACGCGGCCA AGGCTTGGGT GAAGACGTAT
CCCGAGGTAC TGGACGGGTG GTTGGCTGGA GTGACTACCA AGGCCGATGG CAATGCCCTG
GAGGCCGTCA AAGCCAAACT GTAG
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| Protein sequence | MHKFSAAVFA LAISTATAHA ADSDAQCSTV KMADPGWSDI ASTNAVARLL LESLGYQVKI
DSLAVPIIYG GLKDGRVDAF LGNWMPAQQG FHDKFIANGD VQQLSRNLEG TEFTLAVPDY
VWNAGVKDFA DLQKHADQFD KKLYGIGSGA PANLSLKEII DKNEFNLGQW KLVESSEQAM
LAQVDRAVKK QQFITFLGWT PHPMNVKLKM HYLTGGEKWF GSKGEVYTLT RKGYPQACPN
AAKLLGNLKF TLDMENSIMA EVVDKKISFD DAAKAWVKTY PEVLDGWLAG VTTKADGNAL
EAVKAKL
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