Gene PputGB1_0082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_0082 
Symbol 
ID5867770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp88950 
End bp90260 
Gene Length1311 bp 
Protein Length436 aa 
Translation table11 
GC content68% 
IMG OID641545155 
Productsun protein 
Protein accessionYP_001666334 
Protein GI167031103 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0144] tRNA and rRNA cytosine-C5-methylases 
TIGRFAM ID[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.531544 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000000001805 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACCCAC GCCTCGCTGC CGCCCGTGCC CTTGCCGCTG TGCTTAGCGG CAAGGCCTCG 
CTGAATAGCT CGCTGCCGGC CCAACTGGAC AAGGTCGACG AACGCGACCG TGGCCTGACC
CAGGACCTGG CGTTCGGCAC CGCGCGCTGG CAACCACGCC TCGACCTGCT GGCCGCCCAA
CTGCTGCAAA AGCCCTTCAA GGCCGCCGAC GCCGATGTTC AGGCGCTGCT GCTGGTTGGC
CTGTACCAGC TGTTCTACAC CCGCATTCCG GCCCACGCCG CCATCGGCGA AACCGTGGGC
TGTGCCGACA AGCTGAAGAA GCCATGGGCC AAGGGCCTGC TCAATGCCGT GCTGCGCCGT
GCCCAGCGCG AAGGCGAGGA ACTGCTCGCC AGCATGGAGC GCGACCCAGT GGTGCGTACC
GCCCACCCGC GCTGGCTGCA GAAGGCGCTG AAAGCGTTCT GGCCCGCGCA ATGGGAAGCC
ATCTGCGCCG CCAACAACGC CCACCCGCCG ATGATTCTGC GGGTCAACCG CCGTCACCAC
AGCCGCGATG CCTACCTGGC ATTGCTGGCC GAAGCGGGCA TTGGCGCCAG CGCCTGCCAG
TACAGCCGTG ACGGCATCGT GCTGGCCGAG GCCTGTGACG TGCGCGGCTT GCCAGGCTTC
GCCGAGGGCT GGGTGAGTGT GCAGGACGAA GCCGCGCAGC TGTCCGCCGA CCTGCTCGAA
CTGGCCCCCG GCCAGCGCGT GCTGGACGCC TGCTGCGCAC CGGGCGGCAA AACCTGCCAC
TTGCTGGAGG CCGAAGCCGG CCTGGCCCAC GTCGTGGCCA TCGACCTCGA AGCCAAACGC
CTGATCCGCG TGCGCGAAAA CCTCGACCGC CTCAAGCTCG ACGCCGAGCT GATCGCCTGC
GATGCCCGCG ACACCGCCAG CTGGTGGGAT GGCAAACCGT TCCAGCGCAT CCTGCTCGAC
GCGCCATGCT CGGCCACCGG CGTGATCCGC CGTCACCCAG ACATCAAGCT GACCCGCCAG
GCCGACGACA TCCCGGCCCT GGCAGCGCTG CAAGGCGAGC TGCTCGACGC CCTGTGGCCA
ACCCTGGAAG TAGGCGGCAT GCTGTTGTAC GCCACCTGCT CCAGCCTGCC GACCGAGAAC
ACCGAAGTAA TCGACGCTTT CCTCGCCCGC ACCCCAGGTG CCCGTGAGCT GGACCTGGCC
ACCGAGGCCG GCCTGCGCCA GCCCCACGGC CGCCAGTTGC TGGCCCAGGA AGGCGGCCAC
GACGGCTTCT ACTATGCCAA GCTGATCAAG ATCGCCGCCT CACGCGGATA A
 
Protein sequence
MNPRLAAARA LAAVLSGKAS LNSSLPAQLD KVDERDRGLT QDLAFGTARW QPRLDLLAAQ 
LLQKPFKAAD ADVQALLLVG LYQLFYTRIP AHAAIGETVG CADKLKKPWA KGLLNAVLRR
AQREGEELLA SMERDPVVRT AHPRWLQKAL KAFWPAQWEA ICAANNAHPP MILRVNRRHH
SRDAYLALLA EAGIGASACQ YSRDGIVLAE ACDVRGLPGF AEGWVSVQDE AAQLSADLLE
LAPGQRVLDA CCAPGGKTCH LLEAEAGLAH VVAIDLEAKR LIRVRENLDR LKLDAELIAC
DARDTASWWD GKPFQRILLD APCSATGVIR RHPDIKLTRQ ADDIPALAAL QGELLDALWP
TLEVGGMLLY ATCSSLPTEN TEVIDAFLAR TPGARELDLA TEAGLRQPHG RQLLAQEGGH
DGFYYAKLIK IAASRG