Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_0082 |
Symbol | |
ID | 5867770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 88950 |
End bp | 90260 |
Gene Length | 1311 bp |
Protein Length | 436 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641545155 |
Product | sun protein |
Protein accession | YP_001666334 |
Protein GI | 167031103 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
TIGRFAM ID | [TIGR00563] ribosomal RNA small subunit methyltransferase RsmB |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.531544 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000000000001805 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACCCAC GCCTCGCTGC CGCCCGTGCC CTTGCCGCTG TGCTTAGCGG CAAGGCCTCG CTGAATAGCT CGCTGCCGGC CCAACTGGAC AAGGTCGACG AACGCGACCG TGGCCTGACC CAGGACCTGG CGTTCGGCAC CGCGCGCTGG CAACCACGCC TCGACCTGCT GGCCGCCCAA CTGCTGCAAA AGCCCTTCAA GGCCGCCGAC GCCGATGTTC AGGCGCTGCT GCTGGTTGGC CTGTACCAGC TGTTCTACAC CCGCATTCCG GCCCACGCCG CCATCGGCGA AACCGTGGGC TGTGCCGACA AGCTGAAGAA GCCATGGGCC AAGGGCCTGC TCAATGCCGT GCTGCGCCGT GCCCAGCGCG AAGGCGAGGA ACTGCTCGCC AGCATGGAGC GCGACCCAGT GGTGCGTACC GCCCACCCGC GCTGGCTGCA GAAGGCGCTG AAAGCGTTCT GGCCCGCGCA ATGGGAAGCC ATCTGCGCCG CCAACAACGC CCACCCGCCG ATGATTCTGC GGGTCAACCG CCGTCACCAC AGCCGCGATG CCTACCTGGC ATTGCTGGCC GAAGCGGGCA TTGGCGCCAG CGCCTGCCAG TACAGCCGTG ACGGCATCGT GCTGGCCGAG GCCTGTGACG TGCGCGGCTT GCCAGGCTTC GCCGAGGGCT GGGTGAGTGT GCAGGACGAA GCCGCGCAGC TGTCCGCCGA CCTGCTCGAA CTGGCCCCCG GCCAGCGCGT GCTGGACGCC TGCTGCGCAC CGGGCGGCAA AACCTGCCAC TTGCTGGAGG CCGAAGCCGG CCTGGCCCAC GTCGTGGCCA TCGACCTCGA AGCCAAACGC CTGATCCGCG TGCGCGAAAA CCTCGACCGC CTCAAGCTCG ACGCCGAGCT GATCGCCTGC GATGCCCGCG ACACCGCCAG CTGGTGGGAT GGCAAACCGT TCCAGCGCAT CCTGCTCGAC GCGCCATGCT CGGCCACCGG CGTGATCCGC CGTCACCCAG ACATCAAGCT GACCCGCCAG GCCGACGACA TCCCGGCCCT GGCAGCGCTG CAAGGCGAGC TGCTCGACGC CCTGTGGCCA ACCCTGGAAG TAGGCGGCAT GCTGTTGTAC GCCACCTGCT CCAGCCTGCC GACCGAGAAC ACCGAAGTAA TCGACGCTTT CCTCGCCCGC ACCCCAGGTG CCCGTGAGCT GGACCTGGCC ACCGAGGCCG GCCTGCGCCA GCCCCACGGC CGCCAGTTGC TGGCCCAGGA AGGCGGCCAC GACGGCTTCT ACTATGCCAA GCTGATCAAG ATCGCCGCCT CACGCGGATA A
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Protein sequence | MNPRLAAARA LAAVLSGKAS LNSSLPAQLD KVDERDRGLT QDLAFGTARW QPRLDLLAAQ LLQKPFKAAD ADVQALLLVG LYQLFYTRIP AHAAIGETVG CADKLKKPWA KGLLNAVLRR AQREGEELLA SMERDPVVRT AHPRWLQKAL KAFWPAQWEA ICAANNAHPP MILRVNRRHH SRDAYLALLA EAGIGASACQ YSRDGIVLAE ACDVRGLPGF AEGWVSVQDE AAQLSADLLE LAPGQRVLDA CCAPGGKTCH LLEAEAGLAH VVAIDLEAKR LIRVRENLDR LKLDAELIAC DARDTASWWD GKPFQRILLD APCSATGVIR RHPDIKLTRQ ADDIPALAAL QGELLDALWP TLEVGGMLLY ATCSSLPTEN TEVIDAFLAR TPGARELDLA TEAGLRQPHG RQLLAQEGGH DGFYYAKLIK IAASRG
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