| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_3331 |
|---|
| Symbol | |
|---|
| ID | 4572222 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 3670616 |
|---|
| End bp | 3672517 |
|---|
| Gene Length | 1902 bp |
|---|
| Protein Length | 633 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639757390 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_902981 |
|---|
| Protein GI | 118581731 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.332967 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGAATC AAGCCGAACC AAATGTTTTA TATCTGTATA AACTGCTTGA TATGGCACGT
TTTCACCTTG AAGCCGGGCG ATGGGGCGAA ACTGAGCAGA TTTGCCAGAA AGTCATTATG
TTCGAGCCGG AAAACAGGGA AGCTCGCTAT ATGTTGGCTC ATGTTTTGGC TGCTCGGGGG
GATTTTGCAG CGGCTGCGGC TATTATGATG GAACTCTGTA ATGAGACGCC TTGCGAAACG
CTGTATCCGG ATCTTGTTAC CTTCCATGTC AAGGCGGATC GACTGAATGC TGTTACGGCT
TTCTTTCGCA AGCGGGTCGG AGATGATCCG CGGGATTGTG CCGCTTGGTT ATATCTCGGT
CAGGCATGCC TTGACATGGG TGACAAGGCA CAGGCAGGTC AGGCGTTGTT GCGTGCAACA
CGCTTGAAGC CTGACGATGC CAAGGCCCAC TATCAGCTTG CGATGTATCA TAATGACTGC
TGTCACATGG CCGAGGCGGA GCGTTCGCTG CGAAACGCTG TTCAGCTTGA CCCACAGTCG
CATCATTATT GCAACTGGCT TGCCGGTTTT CTCAAGGGAC TTGGCAGAGC GGATGAGGCT
GTAGACTGGT ATCTGCAGGC ATTGACTCTG TCCGATCAGA ACGAAGCATA TTTTTCCAAC
TATCTGATGA ATTTTCTCTG TACAACAGGT TACCCCCCAG ATTTCGTATC CCGCGAGCAT
CTTCGCTGGG CTGAAAAGTG CTGTCGTGCT GCGGGGGAGC CATGGTGCCA GTTTGAAAAC
GAGCCAGATC CGGAACGCAG GCTGCGTATC GCCTATGTTT CCTCTGACTT CTATAGCCAC
CCGGTAGCCT TCTTCATCGA ACCGCTACTC ACGCTTCATG ATCAGCACGA TGTCGATGTG
TATATCTTTT CAAATGTCGA AAAAGAGGAT TACATCACGG AACAGTTCCG GCAACGCTCT
TGTACCTGGC GGCAGATCCG AGGCGTAAAT AACATGGATG TCTGTAGGAT GATCCGCGAG
GAGCGTATCG ACATCCTGGT GGACCTGGGA GGCCACACTC GCCGCAACCG TTTGCCGATC
TTTGCCAAGA AACCAGCCCC TGTCCAGGTG ACCTGGCTGG GGTACGCCAA CACCACCGGT
CTCCCTACCA TGGATTACCG CATCACCGAT GCTGTGGCTG ACCCCCCCGG CATGACCGAA
AGCCAGTACT CAGAACAGCT TTTCCGGTTG CCGGGAAGTT TCATCTGTTA CCACCCTCCG
CTCGACTCAC CGGGGCTCTC GCCCCTTCCC TTGCTGGAGC GGGGAGCGGT GACCTTTGTC
GCCTACAACA ATTTTGCCAA ACTGAACTGT CCTCTTCTGG ATCTCTGGTG CAGGGTGCTG
CGGATGATTC CCGGCTCCCG CCTGGCCCTG AAGGATCGTG CCCTGGCCAA TGACGTGGAA
TTCAGGATGG AGATGCTGGA TTTGTTTGCA CAGCGGGGTA TCACGGCGGA TCGCCTGATC
ATCAGGGACA GGACGGAGAC GGTTCACGCT CATCTTGATG CTTTGGCCGA GGGGGACATA
GCTCTCGACT CGCATCCCTA CAGCGGCACG ACCACGACCT GCGAGTCTCT CTGGATGGGA
GTGCCGGTTG TCACGCTGGC TGGGGGGACC CATGCGTCAC GGGTCAGCGC CAGTCTGCTG
ACCAGTGTGG GGGTTCCCGA GTTGGTTGCT GAAAGCGATG ATGACTTTGT GGCCATTGCC
GTTGCCCTGG CAAAAGATAC GGATCGTCTG CAACACTACC GATGGAATTT GCGGGAGATG
ATGCTGAATT CATCGCTGAT GGATCTTCAG GGCTTTGCCC GCCAGATGGA GAGTGCTTAT
CGTCAGATGT GGAGGAAATG GTGTCAACAG TTCCGTTGCT GA
|
|---|
| Protein sequence | MRNQAEPNVL YLYKLLDMAR FHLEAGRWGE TEQICQKVIM FEPENREARY MLAHVLAARG
DFAAAAAIMM ELCNETPCET LYPDLVTFHV KADRLNAVTA FFRKRVGDDP RDCAAWLYLG
QACLDMGDKA QAGQALLRAT RLKPDDAKAH YQLAMYHNDC CHMAEAERSL RNAVQLDPQS
HHYCNWLAGF LKGLGRADEA VDWYLQALTL SDQNEAYFSN YLMNFLCTTG YPPDFVSREH
LRWAEKCCRA AGEPWCQFEN EPDPERRLRI AYVSSDFYSH PVAFFIEPLL TLHDQHDVDV
YIFSNVEKED YITEQFRQRS CTWRQIRGVN NMDVCRMIRE ERIDILVDLG GHTRRNRLPI
FAKKPAPVQV TWLGYANTTG LPTMDYRITD AVADPPGMTE SQYSEQLFRL PGSFICYHPP
LDSPGLSPLP LLERGAVTFV AYNNFAKLNC PLLDLWCRVL RMIPGSRLAL KDRALANDVE
FRMEMLDLFA QRGITADRLI IRDRTETVHA HLDALAEGDI ALDSHPYSGT TTTCESLWMG
VPVVTLAGGT HASRVSASLL TSVGVPELVA ESDDDFVAIA VALAKDTDRL QHYRWNLREM
MLNSSLMDLQ GFARQMESAY RQMWRKWCQQ FRC
|
|---|
| |