| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_2703 |
|---|
| Symbol | |
|---|
| ID | 4573792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | - |
|---|
| Start bp | 2944165 |
|---|
| End bp | 2945325 |
|---|
| Gene Length | 1161 bp |
|---|
| Protein Length | 386 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639756759 |
|---|
| Product | type II and III secretion system protein |
|---|
| Protein accession | YP_902363 |
|---|
| Protein GI | 118581113 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTT CCGGAAAGTC AATTGTATTG TTCCCTGTCC TTCTTGCCAT CGCGGTTATG
CTGCTGTCGG GGATTGCCCT TGCCGGAGTC CGGACACAGG TGATTGTCAA CAAGAGCGTG
CTGGTCAATC TGAAAAATCC GGCGGAAAGG GTTTCCATCG CTAACCCTGC CATAGCTGAC
CTGCTGCTGA TAACGCCGCG ACAGATTCAG CTGAATGGCT TGGCTCTCGG CGCCACGTCC
CTGATTGTCT GGGAAAAAGG GGGCGAAAAG CCGCTCTTCT TCGATGTTAA TGTGGTAGGC
AACACGAATA TTGACGATTC CCAGCAGGTG CTCTTGCAGG TGAAGGTGGC GCAGATCGAC
AAGACCGCAC TGAAAAACCT CGGTGTCAGC TTTCTGGTTA AAAATCAAAA TGCCAATGGT
TTTTCCAATA TGATCGGAGC TCCCTCAACC AGCTCAACCA GTGCGTCAGG CGACGGCACA
ATCAGTACAG CCAACGGAAT AATTGACGGT TTTAGCAGTC TTAATCCCTA TACCATGGGC
ATTACGCACT TCCCGAGTGG TGTCAGTGCG GTGATAAAAG CGTTGGCAAC CAAGGGCATG
GCAAAAATCC TTGCCGAGCC GAATCTTGTG GTGAAAAGCG GTCAGAAGGG AGAGTTTTTT
GCCGGCAGCA GAATACCATT CAGTGTGCTT GAAAACACAG GAAGTACTTC GACTCCAAGT
ATCAGGTGGG AGGAAGTAGG GGTCAAACTG AATTTCAAGC CATTTGTCAT GGAGAGCGGC
ACCATTGCCC TTGAACTCGA TCCAGTTGAG GTGAGCAATA TTCAGGGAAC TCTTGAGACA
AACGGTTATC CCGTAATAGA CACCAGAACA ATCAAGACTT CGGCGGAGTT GAGGGATGGT
GAAAGCCTTG TCCTGGCCGG ACTGCTCCGT GATGAGACGT ATAAGAGTAT TTCAAAGGTC
CCGCTGCTGG GCGACATACC CATACTGGGG GCTCTGTTTA GAACTACGGA GAATGAACAG
AAAGAAACGG AGCTGGTGTT TTTCATCACC CCAAAGCTGG TCATGCCCGA GGTGCCGGGG
GTCAAGGTTG AGCTGCCGAC GGACAAGCAG CTTACTCCTG AGCAGGAGAA GGAGTTCCAA
TGGATACCGA TGACAAAATA G
|
|---|
| Protein sequence | MKRSGKSIVL FPVLLAIAVM LLSGIALAGV RTQVIVNKSV LVNLKNPAER VSIANPAIAD
LLLITPRQIQ LNGLALGATS LIVWEKGGEK PLFFDVNVVG NTNIDDSQQV LLQVKVAQID
KTALKNLGVS FLVKNQNANG FSNMIGAPST SSTSASGDGT ISTANGIIDG FSSLNPYTMG
ITHFPSGVSA VIKALATKGM AKILAEPNLV VKSGQKGEFF AGSRIPFSVL ENTGSTSTPS
IRWEEVGVKL NFKPFVMESG TIALELDPVE VSNIQGTLET NGYPVIDTRT IKTSAELRDG
ESLVLAGLLR DETYKSISKV PLLGDIPILG ALFRTTENEQ KETELVFFIT PKLVMPEVPG
VKVELPTDKQ LTPEQEKEFQ WIPMTK
|
|---|
| |