| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0885 |
|---|
| Symbol | |
|---|
| ID | 4571780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 930226 |
|---|
| End bp | 932211 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639754927 |
|---|
| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
|---|
| Protein accession | YP_900572 |
|---|
| Protein GI | 118579322 |
|---|
| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0287148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGATA ATCATACGAT CCCGCAGACC CTAACGGTTC TTGAGCAGAC ATGGAACCGC
TATGTCCAGA ATGAAGTGAT TGAGATTCAT CGAATCCGGC CGGAGGTGGC AAACTCCTGG
CAACGCTGCC GAAACTACAA GGTCAATCCC TATGACATTG GTGACCAGGC GGTAAATCAG
CTGGAACTCA GGGAACGTCT CCACCGTAAT CACCATCTGG TAAAGATCGC GCGTTCTGCC
ATGGAAAACC TGTATACCTT TGTTCGGGGG TCTGGTTTTG AAATCGTCCT GTCGGACCAG
CATGCCTACC TGCTGGAGGT TGTGGGGGAT CGTGACATAA TCAGCAAGGG GACCAAGGTT
CAGCTCTGTC CCGGCGGCAA CTGGCATGAG TCGTCCAAGG GAACCAACGC CATCGGGACC
GCTCTCATGG AGAAACAGCC GGTTCAGATC CTGGCCTGGG AACACTTCTG TCGGCCGAAT
CATTTTCTGA CCTGCTCCGC TGCCCCCATT TTTGATCCTG AAGGGGAGAT TGTGGGGGTT
CTCAATATCT CCGGAGATTA CCGTTATGCC AATGCCCATA CCCTCGGCAT GGTTGTGGCA
GCGGTAAATG CCATCGAAAA ACAGCTTTGT CTTCATAAGG TCACCAGTAA ACTCTACATC
TCCTACAAAT ACTCCCAGAC CCTTTTGGAA TCCATTTCGG ACGGTATCGT CTCCGTGAAC
AACAGCGGCA TCATTGCCGA GATGAACTCC AGCGGTGGCA AAATATTCGG CATCAATCAC
CAGGCGGCCA AGGGCAAGCA TATCAACACC GTCATGCGCC AGCAGGCGCC AATTCTGTCG
CTGCTTGCCA CCGGTGAGGG GTATCGGGAT AGGGAAATTC TGCTGGAGAA CCAGGGGAAG
AAGGTGTTTA GTTCTGCTAC CCTGCTGCTG GATGATTCCG GCAACACCAT CGGTGCCGTT
GCCGTCCTGC GCCAGGCGCG GGACGCGCTG AAGTCCCGCC GCGCCCAGCA TTCCTCGTTG
CCCCGCTACT CCTTTGACGA CATTATCGGA GAGAGCCCCG CCATCAGCGA GGCCAAGGAA
TGGGCACGGA TCGCGGCAAA CAGTGGTTCG ACCATTCTGC TCAGCGGTGA GAGCGGTACC
GGCAAGGAGT TGTTTGCCCA GTCAATTCAC AATGTCAGCT CTTTCAGGAA CGGCCCTTTT
ATTGCCATCA ACTGCGCCGC TATCCCGGAA GCCCTTGTTG AAAGTGAGCT GTTCGGCTAT
GCGGAGGGAA CTTTCACCGG TGCCAAAAAA GGCGGTAGCC CGGGTAAATT CGAGAGTGCC
GACCGTGGTA CGCTCTTTCT CGACGAGATA GGCGATATGC CGCTTACTGT TCAGGCCAAG
GTGTTGAGGG TTATCCAGGA AAAGAAGATC TCCCGCGTTG GTTCCAGCGA AGAGCGCCAG
GTGGAGATTC GCATCATCGC CTCGACCCAT AAGAATCTGC GGACAGAGGT GCTAAACGGT
AATTTTCGGG AAGACCTCTT CTACAGGCTC AATGTCCTGG TCGTCCAGGT TCCGCCTTTG
CGTGACAGGG GCGGGGATAT CCCCTTGGTC GCCTGCCATC TGGTGGAGAA GATCTCCGCA
AGGATGGGCA AACAGCGGAT CGTTGGGGAA GATGCTTTCT GGGGAAAGCT TGCCTCTCAT
AACTGGCCCG GTAATGTTCG TGAACTGGAA AATGCCATCG AGCAGGCTGT CGTCAGGTCG
GATGACTCCG GGGTCCTGTT GGCTCGTCAT CTGACGTTTG ATGTCGTTGA GTCCGTCGCA
CCCACGGGGG GGAGGGCAGA GATCGTTTCT CTCACTGAAA TGGAAAAGCA GGCCATAACT
GCTGCGCTTC ATCTCTATGA TGGCAATATC CAGAAGGCTG CTTCGAAACT CGGTATCGGG
CGTAACACCC TGTACCGCAA AATCAGGGAG TACGGCATCG CACATGCCGG TTCCCAAGTC
CATTGA
|
|---|
| Protein sequence | MQDNHTIPQT LTVLEQTWNR YVQNEVIEIH RIRPEVANSW QRCRNYKVNP YDIGDQAVNQ
LELRERLHRN HHLVKIARSA MENLYTFVRG SGFEIVLSDQ HAYLLEVVGD RDIISKGTKV
QLCPGGNWHE SSKGTNAIGT ALMEKQPVQI LAWEHFCRPN HFLTCSAAPI FDPEGEIVGV
LNISGDYRYA NAHTLGMVVA AVNAIEKQLC LHKVTSKLYI SYKYSQTLLE SISDGIVSVN
NSGIIAEMNS SGGKIFGINH QAAKGKHINT VMRQQAPILS LLATGEGYRD REILLENQGK
KVFSSATLLL DDSGNTIGAV AVLRQARDAL KSRRAQHSSL PRYSFDDIIG ESPAISEAKE
WARIAANSGS TILLSGESGT GKELFAQSIH NVSSFRNGPF IAINCAAIPE ALVESELFGY
AEGTFTGAKK GGSPGKFESA DRGTLFLDEI GDMPLTVQAK VLRVIQEKKI SRVGSSEERQ
VEIRIIASTH KNLRTEVLNG NFREDLFYRL NVLVVQVPPL RDRGGDIPLV ACHLVEKISA
RMGKQRIVGE DAFWGKLASH NWPGNVRELE NAIEQAVVRS DDSGVLLARH LTFDVVESVA
PTGGRAEIVS LTEMEKQAIT AALHLYDGNI QKAASKLGIG RNTLYRKIRE YGIAHAGSQV
H
|
|---|
| |