| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0673 |
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| Symbol | rpoB |
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| ID | 4571912 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelobacter propionicus DSM 2379 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008609 |
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| Strand | + |
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| Start bp | 708886 |
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| End bp | 713385 |
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| Gene Length | 4500 bp |
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| Protein Length | 1499 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639754716 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_900362 |
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| Protein GI | 118579112 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTATT CGATCGCCAA CAACCACCTG CTGCGTAAAA CTTTTACCAA AATCAAGAAT
ATCATCGATA TTCCCAATCT CATTGACATA CAGAAGAACT CCTACCGACG TTTCCTCCAG
CAGGAGGGTG TTTCCGAATC CCGAAATAAC ACCGGGCTTG AAGCCGTTTT CAGAAGCGTT
TTCCCGATCA AGGATTTCAG TGAAAGCGCT TCCCTCGAAT ACGTCTCCTA TTCGCTCAGC
AAGCCAAAAT ACGATGTGGT CGAGTGCCAT CAGAGGGGCA TGACTTTCGC CGCTCCCATG
AAGGTCAAGG TTCGACTGGT TATTTGGGAT ACCGGTAAAG AAAGTGGCAT CAGAGCAATC
AAGGATATAA AAGAGCAGGA AGTTTACTTT GGTGAAATTC CCCTGATGAC TGACAACGGG
ACATTTATCA TCAATGGCAC GGAGAGGGTT ATCGTCAGTC AGTTGCACCG CTCCCCCGGC
GTTTTCTACG ATCATGATAA GGGCAAGACC CACTCCAGCG GAAAGGTGCT TTACTCTGCG
CGCGTGATTC CTTACCGCGG GTCCTGGCTG GATTTTGAAT TTGATCATAA AGATATACTT
TATGTACGTA TCGATCGCCG ACGCAAGATG CCGGCTACGG TCCTGCTGAA GGCGCTTGGA
TACTCGGCGG AACAGCTGCT GAACTACTAT TACAAGAGCG AAGAGATTTT TCTTACCGGC
GAAACGCCTT CCAAGAGCAT TGACGCGGAA CTGCTGACGC TTCAGAAGGC GCTGGTTGAC
GTGGTCGATC CGAAGAGTGG CGAAGTCATC GTCAAGGCCA ACCGCAAGTT CACCAAGGCT
TCCATCAGGA AGATGGTCGA GCACGACATT AAGGCGGTAC CCATCACCTT TGATAGCATC
ATCGGGCGTT ACGCTTCCAG TGACGTCATC GATCCCGCAA CCGGCGAGGT GCTGCTGGAG
TGCAATGAGG AAGTGACGGC AGAAAAATTC GATGAGATTA AAGCCAAGGG GGTCGAGAGC
TTCCGTCTGC TGTTCATCGA CAATCTGCAC ATCACCTCAT CCTTCCGCGA CACACTGCTG
ATGGACAAGA TCAGCACGAA TGATGAGGCA CTGATCGAAA TCTACCGTCG ACTCCGTCCG
GGCGATCCTC CCACGCTGAA GAGTTCACTG GCGCTTTTCG AAAATCTGTT CTTCAACCCG
GAGCGCTACG ATCTCTCCGC AGTCGGCCGC TTGAAACTCA ACTTCAAACT CGGTCTCAAG
GTCTGGCCGG AATGCACGGT GCTCAATGCC CCCTGCATGT TCGGTGCTGA AGACATCGCT
AGCTTCGATG AACTTTTCAG GCTCCTGCTT GCAGCTGATA ACCGCTTTTC ACAGTATGTT
CTGGCGCGGC TTCCCGAGGA TTTCGTTAAG GTGCTGCGCA AGCACGAACC TTCACAGCCG
GTTGCGGAAA AATTGCGTGA ACAGCTGCTT AAGGAACTGA ATAATCTGGT CAAGGATCCT
GACTTTTATC AGAAGGAACT GTTCACCGGC CTTGCGCTCA GCCAACAGAC CGTTGCGCTG
ACGGAAGCCA TCGAAGGGGG CGTCTTCGAG GAGAACCGTC GTGTGATCGA GGTTCTGCGC
CGCAACCGGA TGATCTTTGA GGACCTCTAC GCCCCTGTGG TTCTGACCAG CCCCAAGAAT
GATATTCTTG AGATCGTCCG CTATCTGATC GACTTGAAGA ACGGTCGCGG TGCTATCGAT
GATATCGATC ATCTGGGCAA TCGCCGCGTG CGCGCCGTGG GCGAACTGCT GGAGAACCAA
TACCGCATCG GCCTTGTCCG CATGGAGCGG GCCATCAAGG AACGCATGAG TCTGCAGGAG
GTTGAAAACC TCATGCCGCA TGACCTGATC AACTCCAAAC CGGTATCTGC GGTGGTCAAG
GAGTTCTTCG GCTCGTCCCA GTTATCCCAG TTCATGGACC AGACCAACCC GCTCTCCGAG
GTAACCCACA AGCGCCGTCT CTCCGCTCTG GGACCGGGTG GCCTGACGCG CGAACGCGCC
GGTTTCGAAG TTCGCGACGT TCATCCGACC CATTACGGCC GAGTCTGTCC GATTGAAACC
CCCGAGGGAC CAAACATCGG ACTGATCGCA TCTCTTTCTA CCTATGCCCG GATAAACGAT
CATGGTTTCG TGGAGACCCC CTACCGTATC GTACTGGACG GCAAGCTGAC CAATGAGGTC
CGTTTCTTCT CAGCCCTTGA GGAGGAGGGG CATGCCATTG CCCAGGCCAA TGCCGAGGTG
GACGCAGAGG GGCGCTTTGT GAACGATTAT GTTTCGGCGC GCAAGAGCGG CGAGTTCATC
CTCGTTCACC GCGACGAGAT CGAGCTGATG GACGTGGCTC CCAAGCAACT GGTTTCCGTT
GCTGCCGCAC TCATCCCGTT CCTTGAAAAC GACGACGCCA ACCGCGCGCT GATGGGCTCC
AACATGCAGC GTCAGGCCGT TCCGCTGCTG CGCGCCGATT CACCGCTGGT CGGCACCGGC
ATGGAGCGCA TCGTGGCCAA GGACTCCGGG GTCTCCGTGA TAGCCCGCCA TAACGGCGTG
GTGGAGTCGG TCGATGCCTC CCGTATCGTT GTCAAGATCG ACGAGTCCGA AGTGGATGAA
ACCGGTACCG GCGTGGACAT TTACAACCTG ATCAAGTTCG CCCGTTCGAA CCAGAACACC
TGCATCAACA ATAAGCCGGT AGTCAAGGTC GGTGATGTGG TCAAGCGGCA CGATGTCATC
GCCGACGGTC CCTCGACCGA TATGGGGGAA CTTGCCCTTG GCCAGAATAT CGTTGTGGCA
TTCATGCCGT GGGGCGGTTA CAACTTCGAG GACTCCATCC TGGTATCCGA GAAACTGGTC
AAGGATGATC GCTATACCTC CATCCACATA GAAGAGTACG AGTGCGTGGC GCGCGACACC
AAGCTCGGTA AGGAAGAGAT TACCTCCGAT ATTCCCAACC TGGGAGAGGA AGCTCTCAAG
GACCTCGACG AATCGGGCAT CATTCGCATC GGCGCCGAGG TAAAGCCGGG TGATATCCTG
GTGGGCAAGA TCACTCCCAA GGGAGAAACC CAGCTTTCGC CCGAGGAGAA ACTGCTGCGG
GCCATCTTCG GCGAGAAGGC CGGCGATGTG CGTGATACCT CCCTGACCGT TCCCCCCGGT
GTCGAGGGGA CGGTCATCGG TGCCAAGGTG TTTTCTCGCA AGGGAGCCGA CAAGGATACC
CGCACGGAAC TCATCGAGAA GGCCGAAGAG GAGAAACTGC GCAAGGATGA GCAGGATGAG
ATCAGGATTA TCCGCCAGTC TGCGGAAGGC AAGCTTCATC GTCTGCTGAT CGGAAAATCT
TTGTCCGTCA AGTTGGAGGA CGGCGAAGGG AACCTCATTC TGGCCAAGGG CAAGGAAATT
ACTGCCGAGG CCCTGAAATC CCTTTCCATC AACGACATGG GCGCAATCTC GGTGAGCGAC
GATGGCCAAA CCGATGACAA TGTCAGCAAG GTCATCGATA CGCTCAACCG CCAGATAGAG
CTTATTCAGA GCGTGTTCGA AGACAAGATT CAGAAGCTTC GACGCGGCGA TGACCTTCCT
CCCGGGGTCA TCAAGATGGT CAAGGTGTAC ATCGCCATCA AGCGCAAACT GCAGGTGGGC
GACAAGATGG CAGGTCGCCA CGGCAATAAG GGTGTTGTAT CGCGCATCCT GCCCGAAGAG
GACATGCCCT ACATGGAGGA CGGGCGGCCG GTGGAGATCG TCCTCAATCC CCTGGGTGTT
CCCTCTCGTA TGAACGTGGG CCAGATTCTT GAGACGCACC TCGGTTGGGC GGCAAAGGGG
ATCGGCTGGC GCATTGAGGA GATGCTCCAA AAACAGACAT CCGCAGAGAG CCTGAAGGCG
TATCTCAAAG ATGTCTACGG CGACGACGAG GTTGGAACGT TCATAGATGG CATGGACCAG
GAAGAACTCA TGCTGGTCTG CAGGCGTCTC CAGCGCGGTG TATCCATGGC CTCCCCGGTT
TTTGAGGGGG CTTCCGAAGA CAAGATCAAG TCTATGCTCG GCAAGGCCGG ATTTCACTCC
TCCGGGCAGG TTACTCTGTT TGATGGCCGT TCCGGCGACC CGTTCAAGCA CAAGGTCACC
GTTGGTGTTA TGTACGTTCT CAAGCTGCAC CATTTGGTCG ATGACAAGAT CCATGCCCGT
TCCATTGGCC CCTACAGCCT GGTTACCCAG CAACCACTGG GTGGCAAGGC CCAGTTCGGC
GGCCAGCGTC TGGGCGAAAT GGAGGTTTGG GCCATGGAGG CGTATGGCGC GGCCTACGCC
CTGCAGGAAT TCCTCACCGT CAAGTCCGAT GACGTGTCCG GTCGTACGCG TATGTACGAA
GCCATTGTCA AAGGCAAACA TACGCTCGAA CCGGGCTTGC CCGAATCCTT TAACGTTCTT
ATCAAGGAAT TGCAGTCGCT CTGCCTTGAT GTAGAGTTGC TAGAAGGCGA AGACGAATAG
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| Protein sequence | MAYSIANNHL LRKTFTKIKN IIDIPNLIDI QKNSYRRFLQ QEGVSESRNN TGLEAVFRSV
FPIKDFSESA SLEYVSYSLS KPKYDVVECH QRGMTFAAPM KVKVRLVIWD TGKESGIRAI
KDIKEQEVYF GEIPLMTDNG TFIINGTERV IVSQLHRSPG VFYDHDKGKT HSSGKVLYSA
RVIPYRGSWL DFEFDHKDIL YVRIDRRRKM PATVLLKALG YSAEQLLNYY YKSEEIFLTG
ETPSKSIDAE LLTLQKALVD VVDPKSGEVI VKANRKFTKA SIRKMVEHDI KAVPITFDSI
IGRYASSDVI DPATGEVLLE CNEEVTAEKF DEIKAKGVES FRLLFIDNLH ITSSFRDTLL
MDKISTNDEA LIEIYRRLRP GDPPTLKSSL ALFENLFFNP ERYDLSAVGR LKLNFKLGLK
VWPECTVLNA PCMFGAEDIA SFDELFRLLL AADNRFSQYV LARLPEDFVK VLRKHEPSQP
VAEKLREQLL KELNNLVKDP DFYQKELFTG LALSQQTVAL TEAIEGGVFE ENRRVIEVLR
RNRMIFEDLY APVVLTSPKN DILEIVRYLI DLKNGRGAID DIDHLGNRRV RAVGELLENQ
YRIGLVRMER AIKERMSLQE VENLMPHDLI NSKPVSAVVK EFFGSSQLSQ FMDQTNPLSE
VTHKRRLSAL GPGGLTRERA GFEVRDVHPT HYGRVCPIET PEGPNIGLIA SLSTYARIND
HGFVETPYRI VLDGKLTNEV RFFSALEEEG HAIAQANAEV DAEGRFVNDY VSARKSGEFI
LVHRDEIELM DVAPKQLVSV AAALIPFLEN DDANRALMGS NMQRQAVPLL RADSPLVGTG
MERIVAKDSG VSVIARHNGV VESVDASRIV VKIDESEVDE TGTGVDIYNL IKFARSNQNT
CINNKPVVKV GDVVKRHDVI ADGPSTDMGE LALGQNIVVA FMPWGGYNFE DSILVSEKLV
KDDRYTSIHI EEYECVARDT KLGKEEITSD IPNLGEEALK DLDESGIIRI GAEVKPGDIL
VGKITPKGET QLSPEEKLLR AIFGEKAGDV RDTSLTVPPG VEGTVIGAKV FSRKGADKDT
RTELIEKAEE EKLRKDEQDE IRIIRQSAEG KLHRLLIGKS LSVKLEDGEG NLILAKGKEI
TAEALKSLSI NDMGAISVSD DGQTDDNVSK VIDTLNRQIE LIQSVFEDKI QKLRRGDDLP
PGVIKMVKVY IAIKRKLQVG DKMAGRHGNK GVVSRILPEE DMPYMEDGRP VEIVLNPLGV
PSRMNVGQIL ETHLGWAAKG IGWRIEEMLQ KQTSAESLKA YLKDVYGDDE VGTFIDGMDQ
EELMLVCRRL QRGVSMASPV FEGASEDKIK SMLGKAGFHS SGQVTLFDGR SGDPFKHKVT
VGVMYVLKLH HLVDDKIHAR SIGPYSLVTQ QPLGGKAQFG GQRLGEMEVW AMEAYGAAYA
LQEFLTVKSD DVSGRTRMYE AIVKGKHTLE PGLPESFNVL IKELQSLCLD VELLEGEDE
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