| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppro_0340 |
|---|
| Symbol | |
|---|
| ID | 4573106 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelobacter propionicus DSM 2379 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008609 |
|---|
| Strand | + |
|---|
| Start bp | 341075 |
|---|
| End bp | 342589 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639754378 |
|---|
| Product | NADH-ubiquinone oxidoreductase, chain 49kDa |
|---|
| Protein accession | YP_900032 |
|---|
| Protein GI | 118578782 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3261] Ni,Fe-hydrogenase III large subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0164129 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCACG GCATGAAGAC CTTCCACAAC GGCGCCTGCT TCGGGCGCGG CGAGATCCCC
CTGCTGGACA ACGACGGCTT CTTCCAGGGA ATCCTGGACG CCACCGGGCA CGGCTGGCGG
ATCTGCTCCT ATTTCGGCGC TCCCTCTTCC TCAGGGGCGA TCCTCTACTG CGTCATGGCC
TCCAGGGGAA GCGGCTCCCT GGGTATCTTC TCCACCCGGG TAAAGGACAG CTTCCCCTCC
CTGGCCGAGG CCTGTCCCCA GCTGCACCTC TTCGAACGCG AGATCGCCGA GCAGTGCCTG
GTGCGGCCGG AGGGGCACCC CTGGTTCAAG CCGGTGCGCT TTCAGAAGCC GCTCCGCCCT
GGGGAGCAGT TCTGGAAGAA CAGTGACACC GGCCTGCTGC CGGCGGTGAT GGACTTCTAC
CGCGTGGAGG GGGACGAGGT CCACGAGGTA GCGGTGGGGC CGGTGCATGC CGGCATCATC
GAGCCGGGGC ACTTCCGCTT CCAGTGCCAT GGCGAAGAGG TCTTTCACCT GGAGATCGCC
TTGGGGTTCC AGCACCGCGG CATCGAGCGG GCCCTGATCG GCGGGCCGTC GCCGCGAACC
ATGCACCAGA TGGAGGCGGT TGCCGGCGAC ACCAGCATCG GCCATGGCCA GGCCTTTTGC
ATGAACATGG AGGCACTGGG CGCGGTTTTC GCGCCTCCCC GGGCCGAGGC GGTGCGCGGC
GTGGCCCTGG AACTGGAGCG CCTGGCCAAC CACACCGGCG ATCTGGGGGC CATTGCCGGT
GATGTGGGTT ATCTGCCCAC CTCCTCGTTC TGCGGACGCA TCCGGGGCGA TTTCCTCAAC
ATGACCGCCC TGTTGTGCGG CAGCCGCTTC GGACGCGGCC TGCTCCGCCC CGGTGGGCTC
GGCTATGACT GTGACGCCGA AATCGCACAG AGCGTGCTGG AGCGGTTACA CATCGCGCGT
CGGGAGGTGA CCCAGGCCAT CAATCTGCTC TGGGACACCC CCTCGGTCAT GGCCCGCCTG
GAAAACACCG GCCAGCTTAG CGCTGAGGTT GCCCGGGAGA TCGGGCTGGT GGGGCCGGCC
GCCCGCGCCT GCGACGTGAA CCGCGACGTG CGCCGCGACC ACCCCTTCGG CATCTTCCGC
ATGAGCCAGA TTCCGGTCGT CACCGCCGCC AGCGGCGACG TGTACGGCCG CGCCCTGGTG
CGCTGGCTGG AGATGCAGCG CTCCCTGGAT TTTATCGAGG AACAGCTGCA GCATCTCCCC
CGTGGCGGCT TTCGCAACCA GCCAACCAAG GTCGCGCCCG ACCGCTGCGC CGTGGCGCTG
ACCGAGGGGT GGCGGGGAGA GATCTGCCAC ACCGCCCTGA CCGACGGAGA GGGACGTTTC
CAGCGCTACA AGATCACCGA TCCCTCCTTC CACAACTGGA CCGGTCTGGC CCTGGCGCTG
CGCAACCAGC AGATATCGGA TTTCCCGCTC TGCAACAAGA GCTTTAACCT GTCCTACTGC
GGGTTTGACC TGTGA
|
|---|
| Protein sequence | MSHGMKTFHN GACFGRGEIP LLDNDGFFQG ILDATGHGWR ICSYFGAPSS SGAILYCVMA
SRGSGSLGIF STRVKDSFPS LAEACPQLHL FEREIAEQCL VRPEGHPWFK PVRFQKPLRP
GEQFWKNSDT GLLPAVMDFY RVEGDEVHEV AVGPVHAGII EPGHFRFQCH GEEVFHLEIA
LGFQHRGIER ALIGGPSPRT MHQMEAVAGD TSIGHGQAFC MNMEALGAVF APPRAEAVRG
VALELERLAN HTGDLGAIAG DVGYLPTSSF CGRIRGDFLN MTALLCGSRF GRGLLRPGGL
GYDCDAEIAQ SVLERLHIAR REVTQAINLL WDTPSVMARL ENTGQLSAEV AREIGLVGPA
ARACDVNRDV RRDHPFGIFR MSQIPVVTAA SGDVYGRALV RWLEMQRSLD FIEEQLQHLP
RGGFRNQPTK VAPDRCAVAL TEGWRGEICH TALTDGEGRF QRYKITDPSF HNWTGLALAL
RNQQISDFPL CNKSFNLSYC GFDL
|
|---|
| |