| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2640 |
|---|
| Symbol | |
|---|
| ID | 6462191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2728542 |
|---|
| End bp | 2730029 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642728796 |
|---|
| Product | amine oxidase |
|---|
| Protein accession | YP_002019417 |
|---|
| Protein GI | 194337623 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
|---|
| TIGRFAM ID | [TIGR02733] C-3',4' desaturase CrtD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGC AGGATCTGAA TATTGTTGTC ATTGGAGCCG GGATAGGCGG ACTTGCCGCA
GGCGCACTGC TTGCGCGTAA GGGTGCCATG GTTACCGTAC TTGAAGCACA GGACTATCCC
GGTGGCTGCG CAGCAACCTT TTCCCGAAAC GGCTACTGTT TTGATGCCGG GGCAACGATT
GGTTGCGGCT TTCATGCAGG CGCTCCGATG GAGAATCTCG GTAAAGAGCT TGGCATTACC
TGGCCTGTTG AGCCGGAACC GGTTGCCTGG CAATATCGCC ATGGTGCCCT TCATCTCGAT
CTTCAGCCGA ATCGCTTTGA CATTCTTGAG CGTTTTCCCC ACTCGGCGCC ATTCTGGGCA
GAACAGAACG CATTGGCAAA ACTGCTCTGG CATTTCTCTG AAGGGGGGCT TTCCTGGCCA
GTCAAGGGAG TTGGTGATCT TGCCCGTCTT GCCCGTAAAG CTCTTGCCGG ATTTTCCGGA
ACCCGGCATC TGCTGCCATT TGCCAGAAAA ACAGCCCGTG AATGGCTTGC TTCGCACGGC
CTCGATACGG ATCCCGATTT TGTGCGTTTT ATTGACGCCC AGCTTCTGGT CTCGGTGCAG
ACCACCTCAG AGTACGCCAA TGCCATCAAC GCCGCCATAG CCCTTGATCT GCCGGTTGCA
GGCGCATATC ATGTCAAAGG AGGAATTGGA ACCGTTTCCA GGTTGCTTGC AGCCTCCATT
GAAGAGAACG GTGGAGCTGT TCTTTACCGT AAACAGGTTA TTCGGATTGA TTCGGTAAGA
GGGCAGGTGT TTGGCCTTGA AACCTCGGAT GGCAGCGCTC TTGCCGCTGA TTATGTGCTT
GCCAACCTCA CACCGGACTC CCTTGATCGC TTCCTTGCAT CAGAAGGGGA GCCTCAGGAG
GAAAAGAGGG AGAGCCTCCT CTGGAGCGCC TTCACCCTCT ATCTTGGCAT GGAACCAGCC
CTCTTCAGCG CCTTATCATC CCGTCATGTG CAGATTATCG GCAGCAGTGG GGAACTGGCT
GAAGGTAACT CCATTTTTGT TTCAGTTTCA CCCACTGAAG AATCCGGTCG TGCCCCTGAA
GCCCTTTGTG CAGTAACGGT TTCGACCCAT ACCTCGCCGG AGCGGTGGTT TGAGGCAAAA
AAGAGAGGAG AGGCTGCCTA CAGGGAGCTG AAGAGTGCCT ATACTGCACG GGTACTCGAT
GTTCTGACAG AGCAGTTTCC CGCCGCCCGC GATGCCATCC ACAGTATAAC GGCCGCAACA
CCGGTTACCT GGGAGCGTTA TACCGGACGT TTTCAGGGTT GCGTTGGAGG CTATCCCCAG
ACCTCGCTCT TCAAGGTTCG CGGGCCGCTC ACCCGCTTCG ACAATCTGTT TTTTGTTGGA
GACTCCATCT TTCCCGGTCA GTCGCTTCCC GGTGTGGTGA CCGGCGCCCG GCGTACCATC
GAGCTTCTCA TGCAGCGGCA TACAAAAGTG GGGCTTCAGC AACCATAA
|
|---|
| Protein sequence | MKLQDLNIVV IGAGIGGLAA GALLARKGAM VTVLEAQDYP GGCAATFSRN GYCFDAGATI
GCGFHAGAPM ENLGKELGIT WPVEPEPVAW QYRHGALHLD LQPNRFDILE RFPHSAPFWA
EQNALAKLLW HFSEGGLSWP VKGVGDLARL ARKALAGFSG TRHLLPFARK TAREWLASHG
LDTDPDFVRF IDAQLLVSVQ TTSEYANAIN AAIALDLPVA GAYHVKGGIG TVSRLLAASI
EENGGAVLYR KQVIRIDSVR GQVFGLETSD GSALAADYVL ANLTPDSLDR FLASEGEPQE
EKRESLLWSA FTLYLGMEPA LFSALSSRHV QIIGSSGELA EGNSIFVSVS PTEESGRAPE
ALCAVTVSTH TSPERWFEAK KRGEAAYREL KSAYTARVLD VLTEQFPAAR DAIHSITAAT
PVTWERYTGR FQGCVGGYPQ TSLFKVRGPL TRFDNLFFVG DSIFPGQSLP GVVTGARRTI
ELLMQRHTKV GLQQP
|
|---|
| |