Gene Ppha_2476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_2476 
Symbol 
ID6461396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp2563962 
End bp2564606 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content46% 
IMG OID642728654 
ProductNLP/P60 protein 
Protein accessionYP_002019276 
Protein GI194337482 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.188506 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCATAC AGCAAACTCT CTCATCTCCT TTTCGCGTGA GTTTTCCGTT GAAAAAAATT 
ACCCGCACCT GTCGTGCATT CGTTTTCTTC TCAGCATTGG CATTTCAATT GACTCTTCCT
GCAACGGCCT TTTGTGAACT CTCTGCAGAA GTGCCCGTAA CAGCACAGAC GGTGCAGCCA
CCCTCTCAGC CGCATCAGAC CTTTGGGCAT ATGAAGACAT TTTTTAATGA TGTCACCAAA
TATTTTGGTA CACGATACCG TTGGGGTGGT CAGACTCCTG CAGGATTTGA CTGTTCCGGT
TTTGTGGGGT TTATGTACGA CAAGGTCTTC AATATGCGTC TTCCGCGTAC ATCAAGGGAG
ATGTCTGCCA TTGGTACAAA AGTTGACAAA GATCAACTTC AGCCCGGAGA TCTGGTCTTT
TTTCAGACAA GAGGCAGAGG CATTAACCAT GTTGGGATCT TTATCGGTGC AAATACCTTT
GTTCATTCAT CACTATCAAG GGGGGTTGTC GAAGAACAGC TCAAGCAGAA TTTCTATGAG
AAACAGTTTG CCGGAGCTGT GCGCATTCTG GAATTGTCAG TAAATAAACT TCCGGTTACG
GCGCCGGTTT TATCCGATAA GGTCGAGACG ATAAACCCCT CCTGA
 
Protein sequence
MPIQQTLSSP FRVSFPLKKI TRTCRAFVFF SALAFQLTLP ATAFCELSAE VPVTAQTVQP 
PSQPHQTFGH MKTFFNDVTK YFGTRYRWGG QTPAGFDCSG FVGFMYDKVF NMRLPRTSRE
MSAIGTKVDK DQLQPGDLVF FQTRGRGINH VGIFIGANTF VHSSLSRGVV EEQLKQNFYE
KQFAGAVRIL ELSVNKLPVT APVLSDKVET INPS