| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2261 |
|---|
| Symbol | |
|---|
| ID | 6461309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2345782 |
|---|
| End bp | 2347725 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642728449 |
|---|
| Product | LamG domain protein jellyroll fold domain protein |
|---|
| Protein accession | YP_002019073 |
|---|
| Protein GI | 194337279 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00906111 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGA GTTTGACGTG GGGTGGCTGC GCTGATACGT CTGTTGCCTT TTCCGAGTTT
TTTGCCAGTG ACCACACTGT CGCTGTACGA TTCATGATGC AGTTTGTCAA CGCCTATGAT
GGCCCTCTGC TTGCCGTTCA TGGCAGCGGG CTCTATTTCA TTGGTAATGG TGATGGCCGT
GGCGGGAACA ATAAGCTCTC AATCCGCATC GGCACAGGTT TGCTCGATAT TCCTGTTGCC
TCCAGTTTTC AGGAGAGCTG GCATCATATC GCGGTTGTCC GAAAAGGTTC GACTTTCACC
ATTTACCTTG ACGGCGTGTC GAAAGGAACC CTGGCGGTTC CCTCGTCCAA TAAACCAAGT
GGCACACTCC GTCTGGGAAG AAGTGACGAG ATTCATCAAC AGTTTTACGG CTTCATAGAC
GATGTGGCGG TGTTCACTGC GGCACTGACG ACATCTCAGG TTGCGCTGCT TGCAGCGGCA
AAAACGCTGA CGGGAAAAGA GGTGAATTTG CTGGCAGGGT TTATTTTTGG CGACGGAGTG
AGCGAACCGG TTCCAGCGAC GTTGAAGCGA CCTGTAACCT GTGTTCCGGG GGCTCATAAC
GTAACGGTCT CAAATAGCCG TGACAACGCA GCCGACAGCA AGCTGTTGCC GTTGAGCCTG
GTGAGCCACA TGCGTCTGCC GTTTGAACAA GGGCGTATTG TCACTATCTC GCAAGCTTTC
GGCGATCCGA CAATCAGCCA TTCCGGCTAT GCGGCATTCT GTTATGACTT CATGTTTCCT
GATGGTGATA TCAATGGCCA TACCTTCAGG GCCTCCTCCC CGGGAACGGT TGCGCACGTC
TGGGAAGGTG GGCCAAACAC GAGTCAGGGC CCGTCCAATT TTGTGACCAT TCAACAGGGC
GCTACCGAAT TCTGCGACTA CCTGCATCTT CAGCAGAATA GCTGCGGAGT GAAGAGTGGA
GAGCACGTGA GTTATGGCAC GGATCTGGCG ACGGTTGGCA GGTCGGGAAC GGGCTCTCCG
CACCTGCATC AGGCAGTGAC GAACCTCGGG GAGCATACGG CAGATCGTTC TCACTTTGTA
ACAATCGCTT TTCCTTTCTG TAACTATGAG TATTCTGATG ACAGTGGTGC AACCTGGCAT
CATGTTATCC GGGGTTACCT CAAGAAGGGC CAATGGGTCA GGAATCCGGT ACCAAAGTCG
CCCGTTCGCT ATACAGCAGC GTGGACGCCG AATACTACCG GTGAGTATCA GATGTATGAC
GTGCCCTATG CGAAGTACCG TGCACGGTAC GACGAGTTGT GGCCGCAGGG TTGGCGTCTT
TACAGCCTCA GCATCGTCGT TGTGAACGAT GTACCGCTTT ATACAGCCGT TTGGCGCCCG
GGCAGTGGCG GCGAATATCA GATTTATGAC GCCTCTTATG CAAGTTACCG CAAACGCTAT
GACGAACTGT GGGCAAAGGG GTGGCGATTA AAGCTCCTGA CGCGATATGT GATTGGTGGA
CAAATCCGCT ACACGGCTGT TTGGGCCCCC AAAACGGGCG GCGAGTATCA GATCTATGAT
GCCTCTTATG CGAGTTACCG CGCACGCTAT GATGAGTTGT GGCCGCAGGG CTGGCGGTTA
AAACTGATTG ATGTCATCGA CGTCAACGGT ACGCTCAGTT ATACGGCCGC CTGGGAGCCT
TCGAAGGAGG GTGAATACCA GATATACGGA GCAACATTTG CACAGTTCAA GGCACGCTAC
GACGAGCTCT GGTCAGGTGG CTGGAGGCTC AAGTTCATTT CGACCTGCAA CTCAGGTGGA
ACGAAGATAA CGGCCGTGTG GCGTCAGACG AAGGAGCTGG AACTATGGGT TCATGGTTGG
GAGTATGCCG ACTTGCGGGC GCGCTACGAT GTGCTCTGGC AGCAGGGTTG GCGTCTCAAG
CTTTTCGACC GTTTTACGGT GTGA
|
|---|
| Protein sequence | MALSLTWGGC ADTSVAFSEF FASDHTVAVR FMMQFVNAYD GPLLAVHGSG LYFIGNGDGR
GGNNKLSIRI GTGLLDIPVA SSFQESWHHI AVVRKGSTFT IYLDGVSKGT LAVPSSNKPS
GTLRLGRSDE IHQQFYGFID DVAVFTAALT TSQVALLAAA KTLTGKEVNL LAGFIFGDGV
SEPVPATLKR PVTCVPGAHN VTVSNSRDNA ADSKLLPLSL VSHMRLPFEQ GRIVTISQAF
GDPTISHSGY AAFCYDFMFP DGDINGHTFR ASSPGTVAHV WEGGPNTSQG PSNFVTIQQG
ATEFCDYLHL QQNSCGVKSG EHVSYGTDLA TVGRSGTGSP HLHQAVTNLG EHTADRSHFV
TIAFPFCNYE YSDDSGATWH HVIRGYLKKG QWVRNPVPKS PVRYTAAWTP NTTGEYQMYD
VPYAKYRARY DELWPQGWRL YSLSIVVVND VPLYTAVWRP GSGGEYQIYD ASYASYRKRY
DELWAKGWRL KLLTRYVIGG QIRYTAVWAP KTGGEYQIYD ASYASYRARY DELWPQGWRL
KLIDVIDVNG TLSYTAAWEP SKEGEYQIYG ATFAQFKARY DELWSGGWRL KFISTCNSGG
TKITAVWRQT KELELWVHGW EYADLRARYD VLWQQGWRLK LFDRFTV
|
|---|
| |