| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1919 |
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| Symbol | |
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| ID | 6463197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 2011098 |
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| End bp | 2012225 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642728128 |
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| Product | homocitrate synthase |
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| Protein accession | YP_002018758 |
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| Protein GI | 194336964 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR02660] homocitrate synthase NifV |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00307593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATCAGGC CCTGGATTAT CGACACAACA CTTAGAGATG GCGAACAGGC TCCCGGTGTT
GTCTTCAGCA ATACGGAAAA AATTGACATT GCCTCTCTGC TTGCTGATGC GGGAGTCAAT
GAACTTGAAG TCGGATACCC AGCCATCAGT CATGATGAAC GCAAGAGCAT ACAGAAAATC
GTTACACTGA ACCTGCCGGT ACGCCTGACC AGTTGGGCTC GGGCAAAATG GCAGGATATT
GAGGATGCCT GTACCTGCGG GACCGAAGCG GTTCACATCA GCTTTCCTGT TTCGGCGATG
TATCTGGAGC TTATGGGAAG GGATTATGTA TGGGTACAGC AACAGTTGCA GGAACTTGTT
CCACGGGCAA AAAAATATTT TAGTTATGTG AGCGTTGGGG CACAGGATGC CACAAGGGCA
GATGCTGAAC TGCTCGAAAG CTTTGTGCTT GATGCTGAAG CATGTGGCGC GGACAGGGTA
AGAGTTGCCG ATACGGTCGG TATCGCAACA CCAACATCCC TGATCGGGCT GATACACCGC
CTGAAATCAG TAAGCCATGC GGCGCTTGAA TTTCATGCCC ATAATGATCT CGGTATGGCA
ACAGCCAATG CTTATACTGC CCTTGAAGCG GGATGCCAGG CGGTCAGTGT TTCCGTTACC
GGACTTGGTG AGCGAGCGGG GAATGCTGCG CTCGAAGAGC TTGCCATAGC CCTGAAGCTC
TCAGGAAAAT ATGAAACAAG CATTGATACC AGAAAGCTCT CATCGCTCTG CACAGCAGTA
AGCAAAGCAT CCGGAAGAGA GATCGTAGAT CAAAAACCCG TTGTAGGCAA ATCGGCATTC
CAGCATGAAT CAGGTATTCA CTGTGCAGCG TTGCTGAAAC ATCCGCTCTC CTACCAACCA
TTTCTTCCAG ATCAGGTTGG CCGTAACGGG CATGAGATAG TGATCGGAAA ACATTCGGGA
AGCGCGTCGC TGCAGCACTA TTTTTCAGGC AAGGGCATCA CCATGACAAG AGGCGAAGCA
AACCATCTGC TTGCTCTTGT TCGTACAACC GCCACTGAAA AAAAACGGGC ATTGCAGCCC
GATGAGCTTG AACACATCTA CAACACACTC TTGGTGAAAC ACGGATAA
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| Protein sequence | MIRPWIIDTT LRDGEQAPGV VFSNTEKIDI ASLLADAGVN ELEVGYPAIS HDERKSIQKI
VTLNLPVRLT SWARAKWQDI EDACTCGTEA VHISFPVSAM YLELMGRDYV WVQQQLQELV
PRAKKYFSYV SVGAQDATRA DAELLESFVL DAEACGADRV RVADTVGIAT PTSLIGLIHR
LKSVSHAALE FHAHNDLGMA TANAYTALEA GCQAVSVSVT GLGERAGNAA LEELAIALKL
SGKYETSIDT RKLSSLCTAV SKASGREIVD QKPVVGKSAF QHESGIHCAA LLKHPLSYQP
FLPDQVGRNG HEIVIGKHSG SASLQHYFSG KGITMTRGEA NHLLALVRTT ATEKKRALQP
DELEHIYNTL LVKHG
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