| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1918 |
|---|
| Symbol | |
|---|
| ID | 6463200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2009744 |
|---|
| End bp | 2010586 |
|---|
| Gene Length | 843 bp |
|---|
| Protein Length | 280 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642728127 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002018757 |
|---|
| Protein GI | 194336963 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000963224 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT ATTGGGAGGG TAAAAGCGCT GTCGTAACCG GAGCAGCTTC CGGCATTGGT
TTTGCCCTCG CGAAGGCGCT GATTGTCCGT GGTGTTCAAG TCCGGGTTGC CGATATTGAC
GCCGACGGCA TCAGGCAGGC TGCACGGGTA CTTGGCTCGA ATGCGCATCC GGTGGTAGTT
GATGTGCGCG ATGCTTCTGC AGTGCGTGAT GTTGTTGAGA GCACAGCAAG AGAATTTGGC
AGCATTGATT TTCTCTTTAA CAATGCCGGG ATCATCATGT CTGGCGAGTT CCATGAATTT
GATACAGAAC ATGTTGATCG TATCATTGAC GTCAACATCC GCAGTGTCGT CAACGGTATT
GTTGCTGCAT ACCCGTTGAT GATCCGGCAG GGTGGAGGTC ATATCGTGAA CACGGCATCT
CTTGCTGGCC TTGCTCCTTC ACCGTTGCTT TCATCTTATG CCATGACAAA ACACGCCGTC
GTCGGGCTCA CAACCAGTCT TCGTTTCGAG GCTGCCCGCT ACGGTGTTCG AGTCAGTGCC
CTTTGCCCTG CCGCCGTTGA TACTCCTCTT CTTGATGCGG GGATGCCGCC TGATCTGCAC
GAGGTTCCCT GGCGACCAAA CGTTCGGCGC TATCTCGAAA GGCTGGCTGG CACACCCTTT
CCGCCTGACA AGCTGGCTCA TGCTGCCCTG CGCGGTGTGG AGCGCAATCA GGCCCTTATT
CTTGTTCCAG CCCGAGCCCG TCTTACAGCC CTGATTTATC GCCTCGCTCC CGGCCTCGTC
CATACGTTTG GTCAGCACGT TCTTGCTGCG GAACGAAAAG AGCGTCCACA GGGATCATGT
TGA
|
|---|
| Protein sequence | MKKYWEGKSA VVTGAASGIG FALAKALIVR GVQVRVADID ADGIRQAARV LGSNAHPVVV
DVRDASAVRD VVESTAREFG SIDFLFNNAG IIMSGEFHEF DTEHVDRIID VNIRSVVNGI
VAAYPLMIRQ GGGHIVNTAS LAGLAPSPLL SSYAMTKHAV VGLTTSLRFE AARYGVRVSA
LCPAAVDTPL LDAGMPPDLH EVPWRPNVRR YLERLAGTPF PPDKLAHAAL RGVERNQALI
LVPARARLTA LIYRLAPGLV HTFGQHVLAA ERKERPQGSC
|
|---|
| |