Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1911 |
Symbol | |
ID | 6463214 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 2000069 |
End bp | 2002381 |
Gene Length | 2313 bp |
Protein Length | 770 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642728120 |
Product | ribonuclease R |
Protein accession | YP_002018750 |
Protein GI | 194336956 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAGTTTA CCGGTGAGCG GGTGAAGCCG AATGACCATA TTCTTATTAA CGAGTTTCTT TTCAGGCGGG GAGAGAGCTC TCTCGGTGCC GAAATTGTTA CTTTTTTTGC TGACCATGAT GGTGAGCGCT TCAAGTCGGT AGAGTTGGCC AAAGCTCTTG GGTATACCGA ATCAAAACAA CTTCCCGGTT TCTGGTATGT GCTGCACAAA CTGCAGGAAG AGGGGGCCGT TGACAAGGAC TCCAACCGCT GTTATGGCAT GTCGGGCACA GAGGCGACCA CCTATGAAGA TCATCTTGAG CTTGCCAAGC CCTTTCCTCT TCCCGGAAAG AAGCAGTACA CCGTGGCCAA GAGCTATACC GGCCATATCT CGACCCATCC CAATGGCTAT GGTTTTGTTG ATGTCGAAGG GTTTGATGAC GATATTTTCA TCAAGGCTGG CGATATGGGT CTCTCCATCC ATGGCGACGA AGTCGAGGTG CTTGTTTCGA AGGTTCCGGA TACCTATTCT TCCAAATCCA CTCCCCATCA GCGCTGTGAA GGCGCGGTGC AGAAGGTTCT TACCCGTCGT ATTACCACAA TTGTCGGTAC ACTGACCAAG GCAAACCGCA AATTTGTGCT TAAGGCTGAC GACAGAAAGA TTCTGCCTGA AATCATTGTA CCAATCAGAA ATGCCCGCAA GGCGGTTGAT GGTCAGAAGG TGCTTGTAGG GGAGCTTGAT TTCAGCAAGG AGGGGCAGAT CCAGGCCAAG GTGCTTGAAA TTCTGGGTAC TGCGGGCGAC TCAGCGGTTG AAGTGAGCGC CATTGCCCGG AGCCGTGGCA TTGACGAAAC CTTCGACAAA CCACTGCTCG ATTTTGCGGC CTCCATTCGT GAGGGTATTA CCGATGAGGA TCTGAAAGGG CGACTTGATA TTCGCGACAA GGTTGTCTTT ACCATTGATC CTGTCGATGC GAAGGATTTT GATGATGCAC TCTCAATTGA GATGCTTGAG GATGGACAAT ATAAAATAGG CGTCCATATT GCCGATGTAT CGCACTATGT GCCGGAAAAC TCTCCTCTTG ACCGTGAAGC GCTCAAAAGG GCTACCTCGG TTTATCTGGT TGACCGGGTG ATTCCGATGC TGCCTGCACG GCTTTCCGAG CAGATATGCA GCCTCAATCC TGGTGTTGAC CGGATGGCCT TTTCCGTTTT TCTGACGCTG AGCGCTGATG GTGAAGTGCG CAAGCATGAG TTCAACAAAA CGGTTATTCA CTCCAAGCGC CGGTTTGCCT ATGAGGATGT CGAGGAGATT CTGAAGCAGG GCAAGGGTGA TTTTGTTGAT GAGTTGCAGG CGCTTGACCG CCTCAGTGTT CTTCTGCGTG AAAAACGCTT CAAGCATGGC GGTCTCGATT TTGAAACCGA AGAGGTGCGT TTCAAGCTTG GCAGCAAGGG CGAACCGCTT GAAGTGATGA AGAAGGAGCG TCTCGGCAGC CATCGTCTTA TCGAGGAGTT CATGCTGCTT GCCAACCGCA AGGTGGCCAA ATATCTCACC AAGACCTTCA AGGAGAACAA GAAGGAGCCG CAGCCGGTGA TCTACAGGGT GCATGGCGCT CCCCAGCAGG AGAAGGTGCT TATTCTTGCA AACTTTGTCA AGAGGCTCGG CTTTGATCTC AAGCTGAACC GGGGCAAGGA GGGGCCGATT GTTTCAGCCT CAGCGCTTCG GCAGCTCTTG CAGCAGGTGA AGGGTTCCAA TATTGAGTTT CTAGTCAGCG AATTGGTGCT GCGCTGTATG TCGAAAGCGG TCTATACCGG CGACAATGTG GGCCATTACG GTCTCGGCTT TGAGCACTAC ACCCACTTCA CCTCGCCCAT CAGGCGCTAT CCTGACCTGA TTGTGCACCG TATGCTCTTT GAGTATGAGA ACCTCCGGAA GAAACGCCGG AAAATCTCGG CAACACGCCT TGCTGAACTG ACCGACAAGA TCCAGACGGT CTGCCAGATA TCAAACGAGC GTGAAAAAAG CGCTGTGGAG GCCGAGCGCG AGTCGATCAA GCTCAAGCAG GTTGAGTATA TGGCCAGCCA TGTCGGCAAG GTCTATCCCG GTGTTATCTC AGGCGCGACC GATTACGGCA TCTATGTGAG AATGGTTGAT TTTGCCATTG AGGGGATGGT GCACATGCGC AATCTCACCG ATGACTATTA CGAATATGAC GAGGCAACCT ACTCTCTGGT CGGCAAACGG CGCAAAAAGC GGTTGCAGAT TGGTCAGCGG GTCAAGGTCA AGGTGAACAG TGTGGATTTG CAGCGCCGCA CCATTGATCT GGTTATCGAA TAA
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Protein sequence | MQFTGERVKP NDHILINEFL FRRGESSLGA EIVTFFADHD GERFKSVELA KALGYTESKQ LPGFWYVLHK LQEEGAVDKD SNRCYGMSGT EATTYEDHLE LAKPFPLPGK KQYTVAKSYT GHISTHPNGY GFVDVEGFDD DIFIKAGDMG LSIHGDEVEV LVSKVPDTYS SKSTPHQRCE GAVQKVLTRR ITTIVGTLTK ANRKFVLKAD DRKILPEIIV PIRNARKAVD GQKVLVGELD FSKEGQIQAK VLEILGTAGD SAVEVSAIAR SRGIDETFDK PLLDFAASIR EGITDEDLKG RLDIRDKVVF TIDPVDAKDF DDALSIEMLE DGQYKIGVHI ADVSHYVPEN SPLDREALKR ATSVYLVDRV IPMLPARLSE QICSLNPGVD RMAFSVFLTL SADGEVRKHE FNKTVIHSKR RFAYEDVEEI LKQGKGDFVD ELQALDRLSV LLREKRFKHG GLDFETEEVR FKLGSKGEPL EVMKKERLGS HRLIEEFMLL ANRKVAKYLT KTFKENKKEP QPVIYRVHGA PQQEKVLILA NFVKRLGFDL KLNRGKEGPI VSASALRQLL QQVKGSNIEF LVSELVLRCM SKAVYTGDNV GHYGLGFEHY THFTSPIRRY PDLIVHRMLF EYENLRKKRR KISATRLAEL TDKIQTVCQI SNEREKSAVE AERESIKLKQ VEYMASHVGK VYPGVISGAT DYGIYVRMVD FAIEGMVHMR NLTDDYYEYD EATYSLVGKR RKKRLQIGQR VKVKVNSVDL QRRTIDLVIE
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