Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1830 |
Symbol | |
ID | 6463418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 1932945 |
End bp | 1934090 |
Gene Length | 1146 bp |
Protein Length | 381 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642728044 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002018678 |
Protein GI | 194336884 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000559355 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAGA AGTTTTTATC GATTATCGCA GCCGCCCTGT TGGCTTTCCC GTTACAGGTA TCGGCAGCTC CAGTCAAGAT AGGATTTATC AACTCAATCA CCGGTAAAGA GGCGCAAATT GGCGAGAATC TGACCAATGG CGCGGCTATG GCAATTGAAG ATCTGAAGGC CAAGGGAATT CAGGTTGAGC TTGTCAGGGA AGATGATGGC GGTGACCCGA AAAATGCTCT TGCGGCGTAT GAAAAGCTGG TGACTCGTGA TGCCGTTATC GGTGTTGTTG GCCCTTATAC CTCGGGGTGT GCAAATGTTG TTGCCTCAAG GGCTGATCAG TATAAGGTGC CGCTGCTTGT TCCTGCAGCC GCCAAGGAGG AGATCACCAT GAAGGGGTAT AAGAATGTTT TCCGCCTGAA TGCTCCTGCC AATGTCTATT CAAGTGTGCT GATGAAAGCG GTGGCGCCTT ACAAACCGAA GACGATCGCC TATGTCTATG CCGCAACTGA TTTTGGCGTA TCGACGGTCA AGACTGCCCA GGAGAATGCT CTGAAAATGG GGTTGAAGGA GGTTGCCAAC GAAAAGTATC AGCAGGGGCA ACCCGATTAC CGCTCTTCAC TCGCAAAAGT CAAGGCGGCT AATCCTGATC TTGTTTTTCT GGTGTCGTAT GATGCTGATG CTATTCTGCT GATGCGCCAG GCCAGGGAGA TCGGACTTAC ACCAAAGGCT TTTCTTGGCG CGGGTGCCGG TTATACAACG GCTCAGTTTG CCCAGCAGAC TGAAATCTCC AATCTTGTTA TTTCTGCTAC CCAGTGGACT GATGATGTCA ATTGGCCGGG TGCGGCCGAT TTTGCAGTTC GTTACAAGGC AAAATATGCG AAGGAGCCCT CCTATCATGC GGCCTGTGCT TATGAAGCCA TGAGGATTAT GGCGATTACG GCATCCGCCA CCAAAAGTGC CGTGAAACTT CAGGCGGCTC TTAAGGGAGG ATATTGGAAT GGTATTATGG GGCCAGTCAA ATTTGCTGAC TATGGCGGTT TTACCAATCA GAACAACCAT CCGATGCTGG TGCAGCAGAT TGCAAACGGT AAGTATGAAA CGGTCTATCC TGCTCAGTTC AGCAAAAAGA AGCTAATCTA TCCCTTCAAG CGTTAA
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Protein sequence | MKQKFLSIIA AALLAFPLQV SAAPVKIGFI NSITGKEAQI GENLTNGAAM AIEDLKAKGI QVELVREDDG GDPKNALAAY EKLVTRDAVI GVVGPYTSGC ANVVASRADQ YKVPLLVPAA AKEEITMKGY KNVFRLNAPA NVYSSVLMKA VAPYKPKTIA YVYAATDFGV STVKTAQENA LKMGLKEVAN EKYQQGQPDY RSSLAKVKAA NPDLVFLVSY DADAILLMRQ AREIGLTPKA FLGAGAGYTT AQFAQQTEIS NLVISATQWT DDVNWPGAAD FAVRYKAKYA KEPSYHAACA YEAMRIMAIT ASATKSAVKL QAALKGGYWN GIMGPVKFAD YGGFTNQNNH PMLVQQIANG KYETVYPAQF SKKKLIYPFK R
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