| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1668 |
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| Symbol | |
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| ID | 6463117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1773380 |
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| End bp | 1776535 |
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| Gene Length | 3156 bp |
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| Protein Length | 1051 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642727884 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_002018521 |
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| Protein GI | 194336727 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGG ATATGAGCCA GGATCGGGAG AGACTGAACC TCGTTTTAAG TGTTGCACGT
GAAGGCTTTT GGGACTGGAA TCTGAAAACA GACCAGCTTT ACCTGAGCCC CAGATATTGC
GAGGTTACTG GCTACTCCCC AATCGACACC CTGTTCGACA CCGCCTTCAT GAAACTGATT
ATCCACCCCG ATGATCATCA GCTTTTTTTT CATGCCCTGG AAGCGCTGCA TCAGGGAAGA
GAAGAGAGCT TAACGATCGA ATACCGGATG ATTTCAAAAG ATGGCGTTAT GCACTGGATT
GAATGCCGAT GCAGAAAAGT TGAGCATGAT GAAGATGGCA CGGTTTCGCA CCTTATCGGT
ACGATTGTCG ATATCACCGA TAAAAAAAAG AGAGAGCACG ATCTGCACAA ACTCAACCAT
GCACTTCTGG CAAGCAATGA ACGGATGCAC CTCATTATGG CTGCAACCAA TACCAGCATC
TGGGAGTATG ATGTCATCAC GGATACCAAC TTCTGGCCAG ATAAGTTATG GCGAATGTAC
GGCCTTGAGC CCTATAGCTG TGAGGCAACC CATGAAAACT GGCTGAACAC CATCATCCCT
GAAGACCGGG AAAGGATTGC GCAAATCACC GGGGAAGATA TAAGAAATGG CGTCGAATTC
AATAACATAT GGCGGGTTCG TGATCCTGAT GGAGCAATAC GCTGGCTTAT GGCCAAGGGA
ACTCCCTTTA AAGATGCTGA CGGCAAGGTG TTGCGCTATG CTGGAATCGT TCTTGACATT
ACTGATCGCA AGGTACAGGA AGAGGCACTG CAGGAAAGCG AAAATCGCTT CCGGAATCTC
TTTGAGAAAC ACTCCTCGGT CATACTGGTT CTTGATCCCG ATACAAGCCA GATTGTTGAT
GCCAATCAGG CGGCTGCGAC ATTTTATGGG TGGCCGCTTG AAAAACTGAG GCAGATGCCT
TTCCGGCGGG TCACAATGAG CTCGCCTGAA ACGGTGAAAC GTAATCTTGA AAGGTTCAGG
GCGGCAGAGA AAGAGCAAGG CTCTTTTCAC CATTGTCATC GTCATATTTT AGCCGATGGA
TCAATCCGCG ACGTGGAGGT GTTCAGTTGC GCCATTCCAT ATCATGGCAA ACCCCTGATT
TATTCAATCA TTAACGATAT TACCGAGCGA ACGCAGATCG AACATGCCCT GCGTGACAGC
GAAAAAAAGT TCCGTTCCAT TACAGAACAA ATCGCCGAGA TGGTTTTTGT TACCGACGAT
AAAGGAGCCT TAACGTATGT TTCGCCTGTT GTTGAAAAGA TATTTGGTTA CAGCGCCAGT
GAGGTGATCC GGCATCTTTT TACTGAATAT CTTGCTGAAG AGGAAGTTTC GAGAGCCTTG
GCCATATTAG CCAATACATT GCGGGATTAT TTTACCGATC AGGTATTCGA AGGACGGTTC
AGAAAAAAAA ACGGATCCCT TTTTTACGGG GAAGTTCATG TACGCTCTTA CCGGGATCAG
GACTCTTCCG GAATGATTGG TTTGATTCGT GATATTTCGG AGCGCAAAGC ATATCAACAG
GAGTTACTCG AAAGCAGGCA GTTTCTCAAA ACGATCTATG ACGATGTCAA TTACTCTATT
TTTGTTGTCG ATGTTTTGCC CGACCGTTCT TACCTCTTCA AGGGCATTAA CCCGATGCAT
GAAAAACTGA CAGGTATCAA GAGTGAGCAG ATCAGCGGGA AAAAACCGGA AGAGATTCTT
TCTCCTCATT TTGCCGAATT GGTTATGCGC CACTATGATG AGTGCATTCG AGAGGGTCAT
CCGATTCGGT ATGAAGAGTT GCTGCCCTTC AAAGGTAAAG AGACGTTGTG GGAGACCGTG
CTGAACCCTG TCCGCAATGA GAGCGGCACG ATCTGTAGAA TTATTGGTAC CAGCATTGAT
ATTTCGGAAC GTCGCCTGGC CGAAGAGGAG AGAGCACAAC TTGAAGTTCA GCTTCAGCAG
TCCCAAAAAA TGGAGATGAT AGGACGGCTT GCCGGAGGGA TTGCCCATGA TTTCAACAAT
ATGCTTACGG TGATTCTCGG TCACTCTGAA ATGGCCATTG AACTGTTTGA CCCCTCCCAG
CAAGCCTATG CTGATCTTGA GGCCATCCGA CAGGCGGGAG CCCGTTCTGC CGATCTGACC
CGTCAACTCC TCGCCTTTGC ACGCAAGCAA ATCGTCATTC CAAAAATTCT TGAGCTGAAC
AGTGTCATTG AGCATATGCT GCCCATGCTG CGGCGCCTTA TCGGGGAAAA TATTGCGCTT
GTATGGATTC CGGACTGTAA AAACTCCCAT TTGAAGATGG ATCCGTCACA GATCGACCAG
ATTCTTGTCA ATCTCTGTGT CAACGCTCGT GACGCCATAA CTGGTAACGG TACCATAACA
CTGAAAACCG AGTGCCTCGC TCTTCCCGAT ATCGGAAGGA ATGCCCGAAA TTCCGGGGAG
TCGCCTGTTG ACTATGTGAG GCTCTCCATA CGTGATGACG GTGGAGGTAT TGACAAAGAC
GATCTTCATC ACATTTTTGA GCCCTTTTTC ACCACCAAAG AGCAGGGAAA AGGTACCGGT
CTTGGTCTGT CAACGGTCTA CGGGATTGTC AAACAAAACA ATGGCACGAT TGAATGCCAG
AGCGAACCGG GACAAGGAAC CATCTTCACC ATTCAATTGC CCCGCTACAA CCTTCAGCCG
CAGGTGGAGC AGCAGACACA AGCGGAGCAA TTCAGGCATC ATGGCCATCA AACCATTCTG
CTTGTAGAAG ATCAACCGGC TATTCTCAAG CTCTGCAAAT CCATGCTTGA ACGTAACGGC
TATGCTGTAC TTACAGCGGA GTCACCTGCA GAAGCGCTTC GGAAGGAGGC AAACTATAAG
GGAACTCTTG ACTTGTTGCT GACGGACGTA ATCATGCCGG AAATGAATGG CTCCGAACTC
TCCAGACAGC TTCAGGCTCT TCGTCCTGAA CTCAAAACGC TCTTTATGTC AGGCTACACG
GACGACGTCA TTATCCACAA CACGCTTCTT GACAGTGGCG TCAATTTTAT CCAGAAACCC
TTTACCATGA AATCGCTGAT TACCATCGTC GATACCATCC TCAATCCCGA CGAATGCGAG
CCTTCGGGGG CTACTACCAG GCCGCTTGCT GAGTGA
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| Protein sequence | MSQDMSQDRE RLNLVLSVAR EGFWDWNLKT DQLYLSPRYC EVTGYSPIDT LFDTAFMKLI
IHPDDHQLFF HALEALHQGR EESLTIEYRM ISKDGVMHWI ECRCRKVEHD EDGTVSHLIG
TIVDITDKKK REHDLHKLNH ALLASNERMH LIMAATNTSI WEYDVITDTN FWPDKLWRMY
GLEPYSCEAT HENWLNTIIP EDRERIAQIT GEDIRNGVEF NNIWRVRDPD GAIRWLMAKG
TPFKDADGKV LRYAGIVLDI TDRKVQEEAL QESENRFRNL FEKHSSVILV LDPDTSQIVD
ANQAAATFYG WPLEKLRQMP FRRVTMSSPE TVKRNLERFR AAEKEQGSFH HCHRHILADG
SIRDVEVFSC AIPYHGKPLI YSIINDITER TQIEHALRDS EKKFRSITEQ IAEMVFVTDD
KGALTYVSPV VEKIFGYSAS EVIRHLFTEY LAEEEVSRAL AILANTLRDY FTDQVFEGRF
RKKNGSLFYG EVHVRSYRDQ DSSGMIGLIR DISERKAYQQ ELLESRQFLK TIYDDVNYSI
FVVDVLPDRS YLFKGINPMH EKLTGIKSEQ ISGKKPEEIL SPHFAELVMR HYDECIREGH
PIRYEELLPF KGKETLWETV LNPVRNESGT ICRIIGTSID ISERRLAEEE RAQLEVQLQQ
SQKMEMIGRL AGGIAHDFNN MLTVILGHSE MAIELFDPSQ QAYADLEAIR QAGARSADLT
RQLLAFARKQ IVIPKILELN SVIEHMLPML RRLIGENIAL VWIPDCKNSH LKMDPSQIDQ
ILVNLCVNAR DAITGNGTIT LKTECLALPD IGRNARNSGE SPVDYVRLSI RDDGGGIDKD
DLHHIFEPFF TTKEQGKGTG LGLSTVYGIV KQNNGTIECQ SEPGQGTIFT IQLPRYNLQP
QVEQQTQAEQ FRHHGHQTIL LVEDQPAILK LCKSMLERNG YAVLTAESPA EALRKEANYK
GTLDLLLTDV IMPEMNGSEL SRQLQALRPE LKTLFMSGYT DDVIIHNTLL DSGVNFIQKP
FTMKSLITIV DTILNPDECE PSGATTRPLA E
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