| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1654 |
|---|
| Symbol | |
|---|
| ID | 6463151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1749068 |
|---|
| End bp | 1752415 |
|---|
| Gene Length | 3348 bp |
|---|
| Protein Length | 1115 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642727871 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_002018508 |
|---|
| Protein GI | 194336714 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAAA ACGCTTCACC TGTTGATGAT TTTTCTGAAT TGCGCTCCCG AGCTGAAGAG
CGCCTGCAAA AAAGTCAATT GACAAACATG CATCTCTCCT CTTCACCTGA GGAGATGCTT
CGTTTGATTC ATGAACTGGC AGTTCACCAG ATCGAACTTG AAATACAGCA ACAAGAACTG
AGAGAGTCGA GAAAAGAGCT GGAAAAAAGT CTTGAACGAT ACACCGATCT GTATGATTTC
GCCCCATTGG GATACCTGAC CCTTGCACCG GACGGTGAGA TCATCGAATT GAACCTCACC
GCTGCAACGA TTCTTGATAT CTCACGATCC CGGTTGCGCG GAAAACAGTT GAACAAGTTT
ATTATTCCCT CAGACCGCAC GACGTTTGCC ACACTGCTAA AGAATGTGTT CAGCCACAAA
GAGCCAACCT CTTGTGAAGT TGAACTTTCC GCATCTGACA AGGATACTTG CAGCCAGAAA
ACCGTACGCA TTGAAGCGCG CATCAATGAT AATGAAAAGA GCTGCCGCGC CATGCTCTCG
GATATTACCA TGCATAAAAG GATGGCTCAG GCCATGCTTG TCACCAATGA ACGCCAGCGA
CTTATTGTTG ATGCAACCCA TTCCGGCAGT TGGGAGTGGG ATTTACAGAG CAACCACACC
ATATGGTCGG AAGAGCTCTG GCGTCTGCTT GGCCTGGAAC CCTTTTCCTG CCAGGCAACC
TACGAGGTAT GGAAATTGTC CATGCTGGAT GAAGAGAGAG ATCAGGTTGA ACAAATTGTT
TTGAACGCAG TTGAACGTGG GCAGGAGTTT ACTGTTGAAT GGCGTGTCCG CTCTACTTCC
GGCCAGGAGC GCTGGGTGAT GTCACAAGGC ACGCCCTTCA AAGATAGTGA TGGAGTGGTC
AATCGATACG TTGGAATCAC AATAGATATT ACTGAGCTGA AAATGGCTCA GGAAAAGGGA
AAAAAAGAAC AACAGTTCAG TAAAAGCATT ATCAACAGTA TTCCCGGCAG TTTTTATATC
ATCAACACAG AGGGTACCTA TAGCGGGTGG AATAGCTTTC AGCGAGATCA CGTTGTCGGA
AAGCCGGAAA GTGAGATGCA AGATGTCGCG GCCATTTCAA CGATTCATCC GGAAGATCGG
GAGTTTGTTC AGGAAAAAAT GGTGAACGTG CTTGAATATG GCCTCGAAGA AAATGTGGAA
GCAAGAGTAC TGCTTCATGG AGGGCCCGAA TTTCGGTGGT TCCTGATGAC AGGCCGCCGA
ATAGTCGTGG ATGGCAATCC CTTCCTGATC GGAACCGGTA TTGACATTAC AGAACAGAAA
AAAATCGACG ATCTGCAACG TTTTCTCTCT TCTGCAAGCT ATGGTTCAGA GCAAGAACCA
TTCTTTAATG CCCTTGCCCG ATACATCGCC AATAGCCTTG AGATGAATTT TGTCCGTATT
GACAGCCTGG ATGGTGACGG CTTGACGGCC AGAACGCTTG CAGTCTGGTG TGACGATCAT
TTTGAGGATA ATGTCGTCTA TTCCCTGAAC GACACTCCCT GTGGGGATGT CGTCGGCAAG
GATGTCTGTT GTTTTCAGGA AAAGGTGTGT CAACTCTTTC CACACGATCA GGTACTCAAA
GATCTTCGGG CAGAAAGTTA TGTCGGGGTA ACGCTTTGGG ACCATAAAAA GCGACCAATC
GGCCTCATTG CCGTTATTGG ACGCCAACCC CTTGAAAAAA AACAGTTTGC AGAAACCGCA
CTTAAAATAC TATCCGTGCG TGCTGCCAGC GAACTGGAGC GTCTGCAGAG CGAGAACGCT
TTACAGGCAA GTGAGAAAAA GTACCGTGAA CTGTTTGAGA GCGTCCCGAT CGGGCTCTAC
CAATCGACCA TGAAGGGAAA AATAATTGCA GCAAACCAGC ATTGCCTTGA GATTGCCAAA
TGCAGGGAAT CAGAGAGAGA TGTTTGGTTT TCCCAGGATA CCCGACAATC CTACGTTCAC
CCGGAAGATG GCGAAAGAAT CCGGGAACTT CTTTTAAAAA AGGGCCATAT CAACAATTTT
GAGGCCGATT TTCTCCTCAT GGATGGTACC ATCGCCACAC TCAGCAACAC AGCAAAAATT
GTCTTGAATG AACAGGGTGC GCCTGATTTT ATCGCCGGAT CGTTGATTGA TGTCACGGAA
CTCAAACGGA GTGAGGCAGA AAAAGCAAAA CTTGAAGATC AGCTTCACCA ATCCCAGAAA
ATGGAGATGG TAGGAAGACT TGCCGGCGGA ATCGCCCATG ATTTCAACAA TATGCTTACG
CTTATTCTCG GCCACACCGA AATGGCCCTT GAACATTTTG ATCCATCCCA GACAGTCTAT
ACCGATCTTG AGGCCATCCG GGAAGCCGCA ACCCGTTCTG CCGATCTGAC CCGACAGCTC
CTTGCCTTCG CCCGCAAACA GATCATCATG CCTGAAGTTC TTGAGCTGGA CAACTTGATT
GGAAAAATGC TTCCCATGCT GCGACGCCTC ATTGGTGAAA ATATCAAGCT GATATGGATC
CCGAACAGCA AAAACTCCCA TCTCAAAATC GATCCATCGC AGATAGACCA GATTGTTGTC
AACCTCTGTG TCAACGCCCG GGATGCCATA ACCAATAATG GCACAATCAC AATCGAAACA
GGCCATCACC TCGCCCATAA GAGCAGCGAC CCCGAACAGC CAGCTTGTGA ATCGGTGACG
CTTTCTGTCA GTGATGATGG ATGCGGGATT GAGAAGAACA ATCTTGACCA TATTTTTGAA
CCATTTTTCA CCACGAAAGA GCCCGGAAAA GGTACCGGTC TTGGCCTGTC AACGGTCTAT
GGGATTGTTA AACAGAACAA CGGCACCATC TCATGCTTGA GCGAACTGAA AAAAGGAACG
ACCTTCACCA TTCATCTGCC TCTCTACAAT GCGCCACCAC CAGCGGCTGA GACCACACCG
ACGAGTACAT TGATGTATAC AGGCCATCAA ACCATCCTGC TTGTAGAGGA CGAACTGCCT
ATTCTCAAAC TCTGCCAGCT TATGCTTGAA CACAATGGCT ACAAAGTTCT GGCAGCCGCA
ACAGCCGCAG AAGCCATAAA GAGAGCGGAA AACTTCAGTG GAACGATTGA TTTGCTGGTA
ACAGATGTTA TCATGCCGGA GATGAATGGA TCCGAACTCT CAAAAAAACT GCTTTCTGTT
CGTCCGGAGC TTAAAATACT CTTCATGTCC GGCTACACCG CAGATATCAT TGCCCAAGAC
AATGTTTTGG AACGTGGAGT TAACTTTTTG CAGAAGCCTG TTACCATGAA ATCACTGACC
CTGGCTCTCT ATCATATTTT TAACCCCACT CCACTGCAAG AGCCTTGA
|
|---|
| Protein sequence | MSQNASPVDD FSELRSRAEE RLQKSQLTNM HLSSSPEEML RLIHELAVHQ IELEIQQQEL
RESRKELEKS LERYTDLYDF APLGYLTLAP DGEIIELNLT AATILDISRS RLRGKQLNKF
IIPSDRTTFA TLLKNVFSHK EPTSCEVELS ASDKDTCSQK TVRIEARIND NEKSCRAMLS
DITMHKRMAQ AMLVTNERQR LIVDATHSGS WEWDLQSNHT IWSEELWRLL GLEPFSCQAT
YEVWKLSMLD EERDQVEQIV LNAVERGQEF TVEWRVRSTS GQERWVMSQG TPFKDSDGVV
NRYVGITIDI TELKMAQEKG KKEQQFSKSI INSIPGSFYI INTEGTYSGW NSFQRDHVVG
KPESEMQDVA AISTIHPEDR EFVQEKMVNV LEYGLEENVE ARVLLHGGPE FRWFLMTGRR
IVVDGNPFLI GTGIDITEQK KIDDLQRFLS SASYGSEQEP FFNALARYIA NSLEMNFVRI
DSLDGDGLTA RTLAVWCDDH FEDNVVYSLN DTPCGDVVGK DVCCFQEKVC QLFPHDQVLK
DLRAESYVGV TLWDHKKRPI GLIAVIGRQP LEKKQFAETA LKILSVRAAS ELERLQSENA
LQASEKKYRE LFESVPIGLY QSTMKGKIIA ANQHCLEIAK CRESERDVWF SQDTRQSYVH
PEDGERIREL LLKKGHINNF EADFLLMDGT IATLSNTAKI VLNEQGAPDF IAGSLIDVTE
LKRSEAEKAK LEDQLHQSQK MEMVGRLAGG IAHDFNNMLT LILGHTEMAL EHFDPSQTVY
TDLEAIREAA TRSADLTRQL LAFARKQIIM PEVLELDNLI GKMLPMLRRL IGENIKLIWI
PNSKNSHLKI DPSQIDQIVV NLCVNARDAI TNNGTITIET GHHLAHKSSD PEQPACESVT
LSVSDDGCGI EKNNLDHIFE PFFTTKEPGK GTGLGLSTVY GIVKQNNGTI SCLSELKKGT
TFTIHLPLYN APPPAAETTP TSTLMYTGHQ TILLVEDELP ILKLCQLMLE HNGYKVLAAA
TAAEAIKRAE NFSGTIDLLV TDVIMPEMNG SELSKKLLSV RPELKILFMS GYTADIIAQD
NVLERGVNFL QKPVTMKSLT LALYHIFNPT PLQEP
|
|---|
| |