Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1648 |
Symbol | |
ID | 6463174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 1738491 |
End bp | 1739744 |
Gene Length | 1254 bp |
Protein Length | 417 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642727864 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_002018502 |
Protein GI | 194336708 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00420158 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTTGACA GTAATTTTTT TCGCTATACC GGTACGACGC TCTGCTGTGA TGACGTCAAA CTTGAAGAGC TTGCCGCCAA TTTTGGAACT CCTCTTTTTG TGACCTCGAG GAGAAGCGTC ATCGAAAGTT ATAAGGCTTT CGAGTGCGCT TTTGAGGCGC TGCCCCATTT TACCTGCTAT TCAGTCAAGG CCAACTATAA TCTCAGTGTG ATTCGTACGC TTGCTGAACT TGGCTGTGGG TGTGATGTTA ATTCCGCCGG AGAACTCTAT CGGGCATTGC AGTCTGGTGT TTCTCCTGAT AAAATCATTT TTGCCGGGGT TGGCAAGAGA GAGGATGAGA TTGTTTATGC CCTGCAGAGC GGGGTACTTA TGCTGAAAGC TGAATCGCTC TCGGAACTGC GGGCTATTGA CCGGATTGCA GGAGAGCTTG GTTTAACAGC TTCTGTTGCA ATACGGATCA ATCCGAATGT GACGGCTGAG ACCCACCCCT ATATTACCAC TGGCGACAGC AAGGAGAAGT TTGGTATTGA TGAGGCTGAG CTCTCGACGG TATTTTCGCT GCTTTCCCGC TTGCCGAATA TCAAGCTTGT GGGGCTTGAT ATGCATATCG GGTCGCAGAT TTTTGATCCG GAATATTATG TGGCGGCTAC GGTGAAGCTG CTGGCGATTT TCAAGGCATC CAGAGAGCTT GGTTTTGCCA TCGAATTTCT TGATATCGGC GGTGGTTTTC CGGTAACCTA CGACCCCCTG AAACCGGCAA CCCCGATTGA ACATTTTGCT GAAAAGCTGG TTCCGATGCT GTTGCCTCTT GATGTGAAGG TGATTTTTGA ACCGGGACGC TATCTGGTTG CCAATGCTTC GGTTTTGTTG ACCAGAATTC TCTATAAAAA GAGTAATCAT ACCGGCAAGC AGTTTTTTGT GGTCGATGCG GGGATGACTG AACTGATTCG TCCGGCGCTC TATCAGTCGC ATCATGAAGT TCAGTCGGTA ACGTTTCATG AGGAAGAGGT TATTGCCGAT GTTGTTGGCC CGATTTGTGA GTCGAGTGAT TTTTTTGCCC GTCATCGGGC GATTGGAGCG GCAGAAGAGG GTGAGTTGCT TGCGGTGATG TCTGCAGGCG CTTATGCTGC CGTTATGAGC AGCAATTATA ATGGCCGGCT TCGCCCTGCA GAGGTTCTGG TGAACGGGAG TGAAGTCAAG CTGGTGCGTA AACGTGAAAC GCTGGAACAG CTTGTGCAGA ATGAGCTGAC CTGA
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Protein sequence | MLDSNFFRYT GTTLCCDDVK LEELAANFGT PLFVTSRRSV IESYKAFECA FEALPHFTCY SVKANYNLSV IRTLAELGCG CDVNSAGELY RALQSGVSPD KIIFAGVGKR EDEIVYALQS GVLMLKAESL SELRAIDRIA GELGLTASVA IRINPNVTAE THPYITTGDS KEKFGIDEAE LSTVFSLLSR LPNIKLVGLD MHIGSQIFDP EYYVAATVKL LAIFKASREL GFAIEFLDIG GGFPVTYDPL KPATPIEHFA EKLVPMLLPL DVKVIFEPGR YLVANASVLL TRILYKKSNH TGKQFFVVDA GMTELIRPAL YQSHHEVQSV TFHEEEVIAD VVGPICESSD FFARHRAIGA AEEGELLAVM SAGAYAAVMS SNYNGRLRPA EVLVNGSEVK LVRKRETLEQ LVQNELT
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