| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1609 |
|---|
| Symbol | |
|---|
| ID | 6463268 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1695177 |
|---|
| End bp | 1696664 |
|---|
| Gene Length | 1488 bp |
|---|
| Protein Length | 495 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642727824 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_002018464 |
|---|
| Protein GI | 194336670 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | [TIGR00909] amino acid transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAAACA GTTTCAGGAA AAAGCCGCTT TCACTGCTGC TGGGAGAGAT GGATGGCGAA
CATCGGCTGA ACAGGATTCT GGGGCCGGTT GCCCTGACCG GGCTTGGTGT TGGCGCCATC
ATTGGAACCG GTATCTTTGT GCTTATCGGT GTCGCTGCTC ACGACAAGGC TGGTCCGGCG
GTCACACTCT CTTTTGCAAT TGCAGCCCTT GCCTGTATTT TTGCCGCGCT CTGTTATGCA
GAATTTGCCT CGATGGTGCC GGTTGCGGGT TCGGCATATA CCTACGCCTA TGCTACCCTT
GGCGAGCTCT TTGCCTGGAT AATCGGCTGG GATCTGATTC TTGAATATGG CGTAGCTTCG
GCAACGGTTG CGCATGGATG GTCGAAGTAC TTTCAGGATT TCATCGGGAT ATTCGGTATC
GGTATTCCCA AACTCTTCTC CAATGCGCCG CTCGACTTCG ACCCGGATAC CGGTCTGATG
AGCCTGACCG GAGCCTGGTT TGATCTGCCT GCAGTACTCA TCGCCCTTGC CGTTACGGTG
GTACTTGTCA AGGGAATAAA GGAGAGCGCC CGCTTCAATG CCGGGATGGT TCTTGTGAAG
GTGGCTATTG TGCTGCTGGT AATCGTGCTT GGTGCAAGGT ACGTCAATCC TGCAAACTGG
ACACCCTTTG CCCCTTTCGG CTATTCAGGA CTGAGTGTTT TCGGCCATAC CGTTCTTGGT
GAACCAGGTC TTGGGGGCGC ACCTGTAGGG GTGCTTGCCG GGGCTGCCAT GATTTTTTTC
GCCTATATTG GCTTCGATGC CATTTCAACC CATGCCGAGG AGGCAAGAAA TCCCCAGCGC
GATATTCCGA TAGCCATTAT CAGCTCGCTG GTCATCTGCT CGATCCTCTA TATTGCCGTA
GCCGCAGTCG TGACCGGCAT GGTTCCCTAC AACCAGATCA GTATTGATGC TCCTGTCTCC
AATGCTTTCA TGCAGGTTGG AATCGGCTGG GCGCAATTGC TTATTTCGCT GGGGGCCATC
ACCGGCATCA CATCGGTCTT GCTGGTCATG ATGCTCAGCC AGCCGAGGAT TTTTCTTGCC
ATGGCACGTG ACGGGTTGTT GCCGAAATCA TTTTTCGCCT CTATTCATGA AAAATTCAGG
ACGCCCTGGA AATCAACTAT CCTGACCGGT TTTTTTGTCG CCTTGCTGGG CGGATTACTC
CCTTTGCGCC TGCTTGCCGA GCTGGTCAAT ATCGGCACGC TCTTTGCCTT TGTTGTCGTC
TGCAGCGCTG TACTGATCAT GAGAAAAACA AACCCTGAAG CTGAGCGCCC TTTCAAAGCG
CCCTTGGTAC CCTTTGTGCC TCTTGCGGGC ATTTTCACCT GCCTTCTGCT GATGTTTTCC
CTCCCTGCGG AGAACTGGCT GAGGCTGATT GTCTGGCTGC TTCTCGGATT TGTGATCTAC
TTTTTTTATG GACGCAAACA CAGCGCCCTG AACGCCATCA AACCCTGA
|
|---|
| Protein sequence | MKNSFRKKPL SLLLGEMDGE HRLNRILGPV ALTGLGVGAI IGTGIFVLIG VAAHDKAGPA
VTLSFAIAAL ACIFAALCYA EFASMVPVAG SAYTYAYATL GELFAWIIGW DLILEYGVAS
ATVAHGWSKY FQDFIGIFGI GIPKLFSNAP LDFDPDTGLM SLTGAWFDLP AVLIALAVTV
VLVKGIKESA RFNAGMVLVK VAIVLLVIVL GARYVNPANW TPFAPFGYSG LSVFGHTVLG
EPGLGGAPVG VLAGAAMIFF AYIGFDAIST HAEEARNPQR DIPIAIISSL VICSILYIAV
AAVVTGMVPY NQISIDAPVS NAFMQVGIGW AQLLISLGAI TGITSVLLVM MLSQPRIFLA
MARDGLLPKS FFASIHEKFR TPWKSTILTG FFVALLGGLL PLRLLAELVN IGTLFAFVVV
CSAVLIMRKT NPEAERPFKA PLVPFVPLAG IFTCLLLMFS LPAENWLRLI VWLLLGFVIY
FFYGRKHSAL NAIKP
|
|---|
| |