Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1262 |
Symbol | |
ID | 6463749 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 1323163 |
End bp | 1325118 |
Gene Length | 1956 bp |
Protein Length | 651 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642727503 |
Product | TonB-dependent receptor |
Protein accession | YP_002018144 |
Protein GI | 194336350 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.612585 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAAA AAGTATTTCT CGTCGTTGTG GCCGGCTTGC TTTGCAGCAG GGGGCTTCTG GCTGAAGAGC AGCCAAAAAG CTTTACCGGA GAGGAGATGG TGGTTACTTC AAGCCGAGTT GAGGAGCCAA AGAAAAATGT GACCTCCAAC ATTACCATTA TCGGCAGGGA GGAAATTGAG CGCTCCTCAG CACAGGATCT CGGTGCACTG CTTGCCGAAA AGAATCTTGG ACAAATCCAG AAATATCCCG GAACCTTGAC TTCGGTTGGT ATCAGAGGGT TCAGGAGTGA ATCGCATGGT AACGATCTGA TGGGCAAGGT GCTTGTGCTT GTTGACGGGC GTCGTGCCGG CACGGGCAAT CTTGCCAAAA TCATGACTGA CAATGTTGAG CGCATCGAAA TTATTCGTGG CCCGGCGGCC GTACAGTATG GTTCAGCAGC GATAGGAGGT GTTGTTAATG TCATTACAAT CAGGGGTGAA GCGGCTCCCT CTCTCTTCAT CGAACAGAAC GTTGGAAGCA ATGACTACTC AAAAACAGCC GTGGGCGCTC AGGGACGAGT CGGTAACCTT GATTTTTCAG GCAGCTTCTC AATTTCTGAT TCAGGCGATT ATTTAACCGG TTCCAATGAA AGGTATCTGA ATACCGGTTA CAGCGACCAG ACCCTTGCGA GCTTCAATAT TGGGTATGAG TTTTTGCCGG GACAGAGGGT TGGTATAAAC TACCACTCTT TCGATGTTGA AAAAGCGGGC TCTCCCTCCT ATCTGAGTCA GAATGATCTT TCCAGTTACA CGGTCAATAA TAATCACTCG CTCGATTTTA TCTATGAGGG TTCATTGTCT GACAAGCGCT TTTCATGGAT GGCCCGTTAT TTTACCGGTA TGGATGAATA CCAGTATGTC GATCCCGTCT ACTCCTATAA AAGCAGCAGC GATGTTGACC AGAGAGGCGC ACAGGCCCAG TTGACCTTTT CAAAAGAGTC GCTGAGGCTG ACCGCTGGTG TTGACTGGCT GCAGTATGAC CTTCAATCGA CGCTTGTTCC TCTCTGGAGC AAATATGAGA ATCCCGCCGC TTTTCTTCTT GGTAAATATG GCTTGTTCGA TGACCGGTTG ATTGTGACGG CGGGTATTCG TTATGATGAT TACAGGGTTG ATATGGCCGA AGGCGAGGGA AGCTCAAGAT CGAGTGATAA TTTTTCGCAG CAGGCTGGCC TTGCCTGGCA TCTCACTGAT GTGCTGAAAC TCAGAGGCTC TTATGCTGAG GGATTCAGAA TGCCCTCCGC AAGGGAGTTG GCTGGCCAGA TCAACTCTTT CGGAAAAATC TATATCGGCA ATCCCGATCT GAATCCTGAG ACCAGTGATA CCTGGGAAGC GGGATTTGAT GTCGTCAGCA AGGGGCTGAA CTCCTCCTTC ACCTGGTTCA CCACCGACTA TACCGGGATG ATCGAAACGG TTGCAACCGC ACCAAATTCA TTCACCTATC GCAATATAGG CAGTGCAAGG GTTTCAGGAA TAGAATCGGA GCTTTCATGG AAACTGAACG CCCTCTCTCC TTCATGGGTA TTTGAGCCCT ATGTCAATTA CACGCATTTG CTCGAATACA AGGATAACGC TACAGGAAAA CATCTGCTTT ATACCCCGCA GTGGAATGCG AGTACCGGTC TGCGTCTTCG TGATATGAAC GGCTTCAGCG CGGCATTTAG TGTGGCCTGT ACCGGAAAGA GTATGATTCA GGATTATGAG AGTAGTTGGT CAGGACTCGT TGTCACGAAA GGCAGTTTTG CTGTCGCTAA TGTGTCAGCT TCGAAGAGAT TTTCGCTTGG TACGGAGGGA AAGAAGGGAT TGGGTATTAC CCTGAAAGCA GAGGTCGATA ATCTGTTTGA TCGCCAGTAC CAGTATGTAA AGGGGTACAC GATGCCAGGT CGTACCGTTG TGTTTGGATT GAAGGCTGAT ATTTGA
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Protein sequence | MNKKVFLVVV AGLLCSRGLL AEEQPKSFTG EEMVVTSSRV EEPKKNVTSN ITIIGREEIE RSSAQDLGAL LAEKNLGQIQ KYPGTLTSVG IRGFRSESHG NDLMGKVLVL VDGRRAGTGN LAKIMTDNVE RIEIIRGPAA VQYGSAAIGG VVNVITIRGE AAPSLFIEQN VGSNDYSKTA VGAQGRVGNL DFSGSFSISD SGDYLTGSNE RYLNTGYSDQ TLASFNIGYE FLPGQRVGIN YHSFDVEKAG SPSYLSQNDL SSYTVNNNHS LDFIYEGSLS DKRFSWMARY FTGMDEYQYV DPVYSYKSSS DVDQRGAQAQ LTFSKESLRL TAGVDWLQYD LQSTLVPLWS KYENPAAFLL GKYGLFDDRL IVTAGIRYDD YRVDMAEGEG SSRSSDNFSQ QAGLAWHLTD VLKLRGSYAE GFRMPSAREL AGQINSFGKI YIGNPDLNPE TSDTWEAGFD VVSKGLNSSF TWFTTDYTGM IETVATAPNS FTYRNIGSAR VSGIESELSW KLNALSPSWV FEPYVNYTHL LEYKDNATGK HLLYTPQWNA STGLRLRDMN GFSAAFSVAC TGKSMIQDYE SSWSGLVVTK GSFAVANVSA SKRFSLGTEG KKGLGITLKA EVDNLFDRQY QYVKGYTMPG RTVVFGLKAD I
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