| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1016 |
|---|
| Symbol | |
|---|
| ID | 6461365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1051394 |
|---|
| End bp | 1052770 |
|---|
| Gene Length | 1377 bp |
|---|
| Protein Length | 458 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642727267 |
|---|
| Product | nucleoside-diphosphate-sugar pyrophosphorylase |
|---|
| Protein accession | YP_002017917 |
|---|
| Protein GI | 194336123 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000175531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAC TTATTGTCAT CAGAGAACAG GAGTATGCAT GGCTTCGTGA TATGTTGCCT
GGCGTTCACC CGCTGCTTGT ACCCGTATGC AACAAGCCTT TTATCGAATT CTTTATAGAC
TTTTCGATCT TTACCGGCAG CAAGGCCATA CGTATTATAA GTGATGGGCT CCTTGGTGAA
GTGGAACGTT ACTGTGAAAA TGGAAGTCGC TGGGGAGTTG AAATAAGTTA TGGAAGCATG
CAACCTGCTG ACGAACTCCC AACGGTCATT GATAAAAACC GGCGCTTCTG CCTTGAGGAA
AGAGTTCTGA TCATCAAGGG CTTCCTTTTT ATCCATTATG ATAAAAAAAG AGACTACACC
ACCCTTTTCG CATCGCTCCC CTCTGGTGAG TTGCTCAGTT GCTGTCATGG CAGCATCACT
CTTACAGGAA CAGTGGAACC GGAAAGCAGT TCTGCCGATA TCCCCTTTTC ACTTACAGCT
CTTGACACTG TTGGCAAATA CTACAGTCTC TGCATGGAAA TTCTGAGAAG TGAATTGACA
AACTATGTTA TACCCGGATA CAGCAGCGAA GCCGACTGCT ATATCGGCAG AAACGTCGTC
ATTCCAAAAA GTGCTGAAAT AAAAAAGCCG GTTATTATCG GCAACAATGT ACAGTTACTT
GCCAATACCG TTATCGATAC CAACAGCGTC ATCGGCAATA ACGTCATTGT TGACCGGGAA
AGCATTATTT CGGGCAGTAT TGTGATGGAC AACACCTATA TCGGTGAACA TCTTGAGGTG
AAAAACAAAA TCGCAGCAGG CAATCTCCTT ATTGACCCTG AAAGCGGCAC CTCCATTGTC
ATGGAAGACC CTCACCTTTT AACCGGCATG ACTCAATCCA GAGCGGCAGG CACACTGCTT
CGACGAATGG TGCACGCTCT TGCCGCCACC TTTATGATTC TTGTGCTGTT ATGGCCTTAT
CTTCTGCTTC GGCCTGTACT GGGACTGCAA GGCAAGTGGA AAAGAGTGAG AGAGACCTAT
TATAACGATC TGCCAGGAAA AACTGTTACG CTGACAAAGA CAACCATAGA CTCCGACGAG
CCACTCGGTC AACTTGCCAA AACCCTCTCT CTTGACCGTT TTACCCTGCT CTTCAGAGTA
CTCAGTGGAA AGCTTGCCCT TATCGGTTAT CATCCTGTCC CGATCAATCC TGCTCTTCGG
ATCATCCCCA ATAACACGAC AGGCTACACT CCTGCCGTTT TCAGCTATGC AGAAGCCGAA
GACTGGCCTG AAATTGGCAT TGACACAGAA ATAGTTGAAC ATTATTATGC CGTTCATGGC
AATCCTCTAA AAGATATTGC CATGACACAG AAAGCCCTTT TCAACAGAAA TCATTAA
|
|---|
| Protein sequence | MKTLIVIREQ EYAWLRDMLP GVHPLLVPVC NKPFIEFFID FSIFTGSKAI RIISDGLLGE
VERYCENGSR WGVEISYGSM QPADELPTVI DKNRRFCLEE RVLIIKGFLF IHYDKKRDYT
TLFASLPSGE LLSCCHGSIT LTGTVEPESS SADIPFSLTA LDTVGKYYSL CMEILRSELT
NYVIPGYSSE ADCYIGRNVV IPKSAEIKKP VIIGNNVQLL ANTVIDTNSV IGNNVIVDRE
SIISGSIVMD NTYIGEHLEV KNKIAAGNLL IDPESGTSIV MEDPHLLTGM TQSRAAGTLL
RRMVHALAAT FMILVLLWPY LLLRPVLGLQ GKWKRVRETY YNDLPGKTVT LTKTTIDSDE
PLGQLAKTLS LDRFTLLFRV LSGKLALIGY HPVPINPALR IIPNNTTGYT PAVFSYAEAE
DWPEIGIDTE IVEHYYAVHG NPLKDIAMTQ KALFNRNH
|
|---|
| |