Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0994 |
Symbol | |
ID | 6461494 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 1030236 |
End bp | 1030919 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 642727245 |
Product | two component transcriptional regulator, winged helix family |
Protein accession | YP_002017895 |
Protein GI | 194336101 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.337893 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGATTAC TGATTATCGA AGATGAACCG GGAATAGCCG GATTCCTCAA GGATGGACTC GAAGAGGAGT ACTTTGCCGT TGATATTGCC TATGACGGAA AAAGTGGGCT CGACATGGCA CTGATCAATG AATACGACCT GATTATCGTT GACTGGATGA TTCCCGCCAT CAGCGGTATT GAGGTCTGCA GGCAGATTCG AAAAACAGGG AATGCCGTCC CGATACTTTT TTTAACCGCA AAAGATACGC TTGAAGATGT GATTTTCGGA CTTGACGCCG GTGCCAATGA TTATATCAAA AAACCCTTTG AGTTTGAAGA GTTGCTTGCC CGCATCAGAG TACAGCTCAG GAATAAAAAC CGAAATGACG ATTCACTCAA CGCCGGAATC CTTAACATTA ACCCGGTAAC CCATCAGGTA TTCTGTGCTT CAACTGAAGT GACCCTCACA CCGAAAGAAT TTGCCCTCCT TGAATATCTT GTACGTAATA AAGATCGAGT CTGTACCAGA AGCAGAATAA TCGAGCATGT ATGGGATATC CATTTTGATT CCGATACCTC CGTCATTGAT GTCTATATCA CCTTTCTGCG CAGAAAACTC GAAGCTGCAG GTTGTGGAAA CATTATTCAG ACCATCCGGG GAGTGGGATA TATCGTTCGT GAACCAGAGA TTTCAAAAAC ATGA
|
Protein sequence | MRLLIIEDEP GIAGFLKDGL EEEYFAVDIA YDGKSGLDMA LINEYDLIIV DWMIPAISGI EVCRQIRKTG NAVPILFLTA KDTLEDVIFG LDAGANDYIK KPFEFEELLA RIRVQLRNKN RNDDSLNAGI LNINPVTHQV FCASTEVTLT PKEFALLEYL VRNKDRVCTR SRIIEHVWDI HFDSDTSVID VYITFLRRKL EAAGCGNIIQ TIRGVGYIVR EPEISKT
|
| |