| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0973 |
|---|
| Symbol | dinD |
|---|
| ID | 6461215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1011272 |
|---|
| End bp | 1012360 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642727226 |
|---|
| Product | DNA-damage-inducible protein D |
|---|
| Protein accession | YP_002017876 |
|---|
| Protein GI | 194336082 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.965716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAG CGGTTAAGGC AAAAGGGATC GAATTTAACC AGTTTAGTTT TAATTCCCCC
GAATTCGAGG GAATTAAAAA CGAAGCAGGC TTAAATCGTT TTGCGTTATC AGTCAAGCAG
TGGGTAGAAA AAACAGGTTC CATTGGTATC GTTGCCAAAG CAGGTTATCC GTTATCCGTT
CTCTATAGTC AACTGTTAAT TTTAAAAAGA GATGCAGCCA TGAGCAGCAA GGAAATAGAA
AAAAGACATT ACAAGACTTT TGAGGAGATT AAGCAGACTG GTAGAAATGG CTCAGACTAT
TGGATGGCTC GGCAACTGGC CAAGATTCTC GATTATGCGG AATTTCGCAA TTTTTTACCG
GTTATTGAGA AAGCTAAAAG GGCTTGTCAA AATAGCGGGC AACCGGTTGA AAACCATTTC
GTGGAGATGC ACGAGATGGT TCCGATTGGA TCGGGTGCTG AGCGCAAAAT GGAATCCTAT
GCGTTTTCCC GTTATGCCTG TTATCTGATT GTGCAGAATA GCGATCCTTC CAAGCCTGTT
ATCGCCAACG GTCAGACCTA TTTCGCTATC CAGACGCGCC GGCAAGAGTT GGCTGACGAT
GAGGCTTTCA AGCGACTCAA GGAGGAGGAA AAACGCCTGT TTCTTCGTAA CGAAATGCGC
GAGCACAACA AACAATTGGT GGAAACTGCT CAACAGGCGG GGGTGGAAAC CACTCTTGAT
TTTGCCATTT TTCAGAATCA CGGTTACCAG GGACTTTATG GCGGACTGGA TGCCAAGGGC
ATTCATCAAC GCAAAGGTCT GAAAAAAAGT CAGCATATCC TCGATAATAT GGGCAGCACA
GAGTTGGCAG CCAATCTCTT TCGTGCTACG CAGACAGATG AAAAACTCCG CAGGGAAAAT
GTTCAGGGAA AGACCATGGC CAACAAGACT CATTTTGATG TCGGTAAAAA AGTACGCCAG
ACCATCAAGG AACTGGGCGG TACCATGCCC GAAGATTTAC CGAAACCTGA AGAGGATCTG
AAAAAACTGG AGCGACGGGC GCAATCCCCG GAGAAAAAGC TGGGTGGAGG CATGAATGAA
CTGGAATAG
|
|---|
| Protein sequence | MTVAVKAKGI EFNQFSFNSP EFEGIKNEAG LNRFALSVKQ WVEKTGSIGI VAKAGYPLSV
LYSQLLILKR DAAMSSKEIE KRHYKTFEEI KQTGRNGSDY WMARQLAKIL DYAEFRNFLP
VIEKAKRACQ NSGQPVENHF VEMHEMVPIG SGAERKMESY AFSRYACYLI VQNSDPSKPV
IANGQTYFAI QTRRQELADD EAFKRLKEEE KRLFLRNEMR EHNKQLVETA QQAGVETTLD
FAIFQNHGYQ GLYGGLDAKG IHQRKGLKKS QHILDNMGST ELAANLFRAT QTDEKLRREN
VQGKTMANKT HFDVGKKVRQ TIKELGGTMP EDLPKPEEDL KKLERRAQSP EKKLGGGMNE
LE
|
|---|
| |