| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0872 |
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| Symbol | |
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| ID | 6461088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 910989 |
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| End bp | 912746 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642727127 |
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| Product | histidine kinase |
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| Protein accession | YP_002017777 |
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| Protein GI | 194335983 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.266432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGACG GCACATTCCA CACCCATGAT CACTCCTTGT TGCGTTGCAC TGATGAAAAA
CATTTGCGGA ACAGTGAAGG GATAGAGTCA GATTATTCCT CTTCACGTAT GGAAATGCGT
CGCATTATTC ACGAACTTTC GGTTCATCAG ATTGAACGTG TGATTCAGAA GGATGAGCTG
CTTCTGTCGA GAGAGAAACT TGAAAAGAGT CTGGAATATT TTATTGAGCT TTACGATTTT
GCTTCGCAGG GCTTTTTGAC CCTTTCATCT GATGGCACCA TCCTTGAGGC TAACCTGACT
GCTACGAAGT TGCTTGATGT TGAACGTTCC CGTTTGAAAG GGAGTCGTTT CGAAATGTTC
GTCGCTTTTG AGGATATTTC CGTCTTCAAT GCCATGATTG ATAATGTGTT CAGTTTCAGG
AGGTCTGGTT TTTGTGAGAT CTCTCTCTAT CGTGATCATG TTGAGTCTGC AGGGGCGACA
TCTCTCACTC CGCGTATCTT GCGTGTTGAT GCGCTTATCA GGAATGATAA CCAGCAATGC
CTTCTCGTTC TTTCTGATAT TACCAGGCAA AAACAGATAG AACAGGAGAA TGCGAGGCTT
CAGGACGCAC TCGAAAATTT CCGGAACATG GAGATGGTCG GTCAGCTTGC TGGTGGTATG
GCGCATTACA ACAAGATGCT TGATGTTATC CTCGGTCATG CCGAGAGCAT CCGCAAAGAG
GTTGATCCTG CCTCTTCCGT TCGTTCCAAT CTTGAGGCAA TCCAGAAGGT TGCAACCCGT
TCTGCCGAAA TAACCGGTCA GCTTCTTGAC TTTGCCTGTA AACGGGTTGC CATTCCGAAA
ATAATAGGAC TTGATGGCAT GGCAGAGGGG ATTATCACCA TGTTACGGCG ACTGATCGAT
GAAAGTATCA CGCTTGTCTG GGTTCCAGCC AGCCGGAATG CCTTGATCAA GATCGATCCC
GTCCAGATCG ACCAAATCAT CCTCAATCTC TGCCTCAACT CCCGTGATGC TATGGTTGCT
GGTGGCAAGA TCACCATGGA AACCGGCAGG GTGACGGTTA CGAAAGAGGA GTGTGCGCAT
GGTCATTGCT GTGCGGCGCC AGGAGAGTAT GTTAAACTTG TTGTTACGGA TGATGGGTGC
GGTATTGATA CAAAAGATCT TCCCCATATT TTTGAGCCCT TTTTTACAAC CAAGCTCGCA
ACTGACGGTA ATGGTCTTGG GCTTTCTACC GTCTATGGTA TTGTCAAACA GAGTAACGGC
AGTATCAAAT GCGAGAGCAA ACCGGGGCAC GGCGCCACCT TTACCCTCTT TTTTCCGCAT
CACAGGAGCA GTGCAGCGTC AATCCGGACG GTGCAACTCA ATCCCAGCGT GGCGACCCAG
GGAGAGGAGA CCATCCTCCT TGTTGACGAT GAATCTGAGG TGCTTGAATT GCTGAAGGAG
ATGCTTGAGC ACTATGGCTA CAATGTGTAT ACAGCGAATC CCGCTCGTGC CATTCTCATA
GCGGAGCAAC ACCGTGGAGG CATCGATTTG CTGTTGACTG ATGTGATGAT GCCGGAGATG
AACGGGTTTG AACTTGCTCA ACGGATCAAA TCGGTCGTTC CTGATATTAA AGTGCTCTTT
ATGTCTGGTT ACAGCACTGA TGTTATTTCG GATGATACCA TTATTCAGGA CGGAGTTAAT
TTTATTCAGA AGCCATTCTC GTTCAAGGCG CTCTCTGTTG CGGTGCGTGC AATACTCAAT
CCGGTGAGCG AAGTGTGA
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| Protein sequence | MTDGTFHTHD HSLLRCTDEK HLRNSEGIES DYSSSRMEMR RIIHELSVHQ IERVIQKDEL
LLSREKLEKS LEYFIELYDF ASQGFLTLSS DGTILEANLT ATKLLDVERS RLKGSRFEMF
VAFEDISVFN AMIDNVFSFR RSGFCEISLY RDHVESAGAT SLTPRILRVD ALIRNDNQQC
LLVLSDITRQ KQIEQENARL QDALENFRNM EMVGQLAGGM AHYNKMLDVI LGHAESIRKE
VDPASSVRSN LEAIQKVATR SAEITGQLLD FACKRVAIPK IIGLDGMAEG IITMLRRLID
ESITLVWVPA SRNALIKIDP VQIDQIILNL CLNSRDAMVA GGKITMETGR VTVTKEECAH
GHCCAAPGEY VKLVVTDDGC GIDTKDLPHI FEPFFTTKLA TDGNGLGLST VYGIVKQSNG
SIKCESKPGH GATFTLFFPH HRSSAASIRT VQLNPSVATQ GEETILLVDD ESEVLELLKE
MLEHYGYNVY TANPARAILI AEQHRGGIDL LLTDVMMPEM NGFELAQRIK SVVPDIKVLF
MSGYSTDVIS DDTIIQDGVN FIQKPFSFKA LSVAVRAILN PVSEV
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