Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0558 |
Symbol | |
ID | 6461847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 545187 |
End bp | 546209 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642726833 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_002017488 |
Protein GI | 194335694 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.201229 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAAAG ATAAAAAGCT TTTTATAACA GGTGGCACAG GTACTTTTGG CAATGCTGTT TTAAGGCGTT TCCTTCAGAC TGATATAGCG GAAATTCGAG TTTTCAGTAG GGACGAAAAG AAGCAAGATG ATATGCGCAA GCATTATGCT CATACCAAGC TTAAGTTTTA CATTGGGGAT GTGCGCAATG CGGATAGTGT AAGGGATGCG ATGGAGGGTG TTGACTTTAT TTTTCATGCG GCGGCTCTGA AACAGGTTCC TTCCTGTGAG TTTTTTCCTG TTGAGGCGCT TCGTACCAAT GCGATGGGTA CACACAATGT GCTTACACAG GCTACTGCTG TTGGTGTGAA GCGGGTGGTA GTGCTGAGTA CTGATAAAGC AGTCTATCCG ATTAACGCGA TGGGTATCTC AAAGGCTATG ATGGAGAAAA TTGCCGTTGC CCAGTCGCGT GTTTCTGGGA GTCGGACGGT TATTAACGTG ACGCGTTATG GTAATGTGAT GGCAAGTAGG GGTTCTGTTA TTCCGCTGTT TCTGAAGCAT ATCCAGGAGG GTCGGCCCAT GACCATCACT GATCCCAAAA TGACTCGTTT CATGATGACG ATTGATGATG CAGTTGATCT TGTGCTTTAT GCCTTCACTC ATGGTCAGCC AGGTGATACT TTTGTGCAGA AGGCACCAAG TGCTACTATT GAAGTGTTGG CGTTGGCACT GAAGAAACTG ATGAAGAGCG ATGTCTCAGT TAGCATCATC GGTACACGCC ATGGGGAAAA ACTTTATGAA TCGCTTCTGA CCCGTGAAGA GCTTACAGTT GCTCAGGATT TGGGCGGGTA TTACCGAGTT CCTGCTGATA ATCGTGATTT GAACTATGCT GCTTTTTTCA GTGAAGGGCG TGAAGAGGTG TCACTGAAGG AGGATTATAA TTCACATAAC ACTGCAAGAG TTGATGTTGA TGGCATGTGT GAGTTGCTTT TGAAGCTTGA TTGCGTGAAT GCTGCGATGA GAGGTGAACG GGTTGAGGTT TAA
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Protein sequence | MFKDKKLFIT GGTGTFGNAV LRRFLQTDIA EIRVFSRDEK KQDDMRKHYA HTKLKFYIGD VRNADSVRDA MEGVDFIFHA AALKQVPSCE FFPVEALRTN AMGTHNVLTQ ATAVGVKRVV VLSTDKAVYP INAMGISKAM MEKIAVAQSR VSGSRTVINV TRYGNVMASR GSVIPLFLKH IQEGRPMTIT DPKMTRFMMT IDDAVDLVLY AFTHGQPGDT FVQKAPSATI EVLALALKKL MKSDVSVSII GTRHGEKLYE SLLTREELTV AQDLGGYYRV PADNRDLNYA AFFSEGREEV SLKEDYNSHN TARVDVDGMC ELLLKLDCVN AAMRGERVEV
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