| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0468 |
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| Symbol | |
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| ID | 6462129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 455997 |
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| End bp | 459557 |
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| Gene Length | 3561 bp |
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| Protein Length | 1186 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642726756 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_002017411 |
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| Protein GI | 194335617 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.304689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAGAAAT TCCATACTTC ACCAATCAAA CAAAACCCGC CAGCGTTGCA GAACAAAGAG
CACTTTTATG TAAACAGAAA TGCCAGGGAA CTTTTTCATC TGACTGATCC TGAGTTCCTC
TCTTTACCAT CTTCCGGTCA GGAAAGTATC ATAACATCGG AACGACAGAC TGCCGTCATC
AACAATTTTC TGAAAAAGCT GAAGGGCGCC GATGCGAAGC CGGTGCTGCC AGCGCAGTTC
CTCGGCATGA AACTGCTGCA TGCGCTCTTT CACTCGATTA TGACGAAAGC GATCGCTTTA
CGGCAACCGG ACTTTCTGGA GCGTCTCTCG GGTACGCTGA AGGAGATGCT TTCTGAGGAG
GAGTCGGAGG AGTACCTGAA ACGATTTGTC GCCTCTTTTC CTGCGCAGAA TGTCTATGCC
GGAACGGAAA CGCCTTCGGA GTGGCTTCGG CTGCAGGAGA ATCGGAAGCA TGTGCTTGAG
GAGTCTTTCC TGGTCTGGCT GAATAATCAG AACCCCGCTT TGGAACAGTT TTCCGATCTT
TTGAACGATG AGAAGCTGAC ACGGGAGAGT TCGTACCGGA AGGTGATTAT GACCATGCGA
AGCTCCATGC AGGCAATGGG GCCTGTGGGG CCCGACCATA TCGATCTTGC TGAATTGCTC
ACCCGCCCCA TAAAACATGC TCCGACCTCC ATTCTTGAAC AGCTTCGCTA TATCCGCCTG
AATTGGGGTG ATCTGCTCGA TGAGTCGCCT CTTTGGGGAT TGCTTGGCGG CGCCATCGAT
TTTATTGAGG ATGAGGATAA GTACCTCTTT TTCGAAAAGA TTGCCCAGGA GCGTGCTCTG
CGAAATGATG GCCATGTGTT TGAGAAAGAG GTTCATGTCC CGGAATACAG CTCTCTGGAT
GATGCCAATG CTCCGGCAAA CTACTCTATT GATTCGTCGT GGATGCCTGA AGTGGTGATG
CTTGCCAAAA GCACCTATGT CTGGCTCGAT CAGCTCAGCA AGATCTATCG GCGCCCGGTT
CACCGACTGC AGGATATTCC CGATGCTGAG CTTGACCTTA TTGCTGAACG CGGCTTTACG
GCATTATGGC TTATCGGACT CTGGCAGCGC AGCTTTGCTT CCCAGAAAAT CAAGCAGCTC
CAGGGAAATC CTGAGGCCAA GGCGTCGGCA TATGCTCTTG AAAATTATAC GATTTCCGAT
GACATTGGCG GTTATGAGGG TTATCACAAC CTTTTTCAGA GAGCCAAACA GCGTGGTATC
CGCCTCGCAA GTGATATGGT GCCAAATCAC ACCGGAATGG ATTCTGAACT TGTCCGAAAC
AATCCGGACT GGTTTCTCTC CTCTCACACG GCTCCTTATT ATAACTACTC CTATAATGGG
CCGAACCTCA GCAGTGATTC GCGCTATGGT ATCTACCTCG AAGATGGGTA CTGGAACCGT
TCTGATGCGG CAGTGACCTT CAAGCGGGTT GATTACCTCA CTGGTGATAC GCGATACATC
TATCATGGCA ATGATGGTAC CATTATGCCC TGGAATGATA CTGCACAGTT GAATTTTTTG
AGTGCGGAGG TTCGTGAAGG GGTGATTCAG CAGATTCTTC AGGTTGCGAG GATGTTCCCC
ATTATCCGTT TCGATGCTGC AATGGTGCTG GCGAAACGGC ATATCCAGCG TCTCTGGTTT
CCGCTTCATG GTCACAGCGC GGGGGTTCCA TCGCGTTCAG CAAATGCCAT GAGCATGTCG
GAATTTGATG CCGCCATCCC TGAGGAGTTC TGGCGTGAGG TGGTTGACCG TATTCACCAG
AAAGTGCCTG ATACGCTGCT GCTTGCAGAG GCGTTCTGGA TGCTTGAGGG CTATTTTGTC
CGCACGCTTG GCATGCACCG GGTCTATAAC AGCGCTTTTA TGCACATGCT GAAAAAGGAG
GATAATGCCA ATTATCGCTA CCTGATCAAG AATACCCTTG AATTTGACGC TGAAATTCTC
AAGCGCTATG TCAACTTCAT GAATAACCCT GATGAAGATA CGGCCATTGC GCAGTTTGGC
CGGGGGGATA AATATTTCGG TGTCTGCATG ATGATGCTGA CCATGCCTGG ACTGCCTATG
TTTGGCCATG GACAGGTGGA GGGTTTTACC GAGAAATATG GCATGGAGTA TGCAAAGGCC
TATTATGATG AGCAGCCGGA CGAAAATCTT GTCGGGCGTC ATTATCGCGA GATCTTTCCG
ATCATGAAGA AGCGTCCGCT CTTTGCCGAG GTGCGCAATT TTTTCCTTTA TGATGTCTAT
TCACCGGAAG GGGCAGTCAA TGAGAATATC TTCGCCTATT CCAATCGACT GGGTGAGGAA
ACTGCCCTTG TTGTCTTTAA CAACTGCTTT GAACAGGCTA CGGGCTGGAT TAAAACTTCG
GTCGGCTATC TGCAGGATCA TGAGATCCGC CAGAGTTCAC TCTCTGAAGG ACTCAATATT
GGCCGTCAGG AGAATGCCTT CGTTATCTTC AGGGATCATG CGAGTGGTAT GGAGTTTCTC
CGCTCTTGCA GGGAGATTGC CGACAATGGG CTCCTTGTTG CTCTCGATGG CTATAAGTAT
AATGTCTTCC TTGATTTCAG GGTTGTTACG CCGTCAAAAC TCAGGCCCTA CGACCGGCTT
GCTGCGGAGC TCAATGGCCG GGGGCTCGAG TCGATAGAGC GTGCTGCTCT TGCCATGAGT
CTCTCGCCGC TGCACCGGAT TATCACAGCC GCCCTGACGG GGGAACTGCT TCCTGCTGTG
GATGAGTGTG GAGTGGAAAG CGATGCGATT GGCCTGTTCG AGAGTGCCGT GGCTTCGCTG
CTTAACAGGG CTGGCGCTAC GTTCAGTGAA ATTATGGAAA AACCGCTTGC TGTTCCCTCC
GCTCTTGCAT CGAAGGCGGC TGAGCTTTAT GGCAGGGCTC TCCTCTTTCC GGATCTTCTG
AAGGGAGATG CGCATTCCGG CAAACTTCAG TTGGCTCTTG GTTTGGGCAG CGAAGGGGGC
CTGGAGTATG CAACCCTTGT GCGGCAGTGG GTTATGCTTG ATGCAGTGCA GCAGATGGTT
GCTGCAGCCG GAGAGATCCA TTCGAACCTG ATTGATGACT GGCTGATGAG TGATGCGCTC
AGGGCAATCT ATCCTGAATC GGGAATGATC GGTATTCCTG CTGAAAACCT GCCTGACCTG
CTTGTCTGCA TGCTCACTCC TCAACCGGCG GCTGCAGGAG CAGATGAAGC GGCTGAGGCC
TCTCTGCTCG CTCCTGTGAA AGCGCTCTCT ACCCTCAATC AGCTCCATCT GGGCCGTATG
CTGCAATTTG ATGAGCGGCA TGGTAAAAGA TGGTTCCGCG AGCATCGTTT CAGCGTTCTG
GTGGCGTGGC TTACGTTACA GGAGTTGCTG AAAGAGCGTT ATGGGGTTGC TTCTGATGAT
GAGGTTGAGG TTGAGGTTGA GGTTGAGGTT GAGCAAATGG AGAGGGTAGT TGCCCGTTGG
GTGGAGGCTT CAGGAGCGCT TGACATGGAG GCTTTCCTTT CGGGATATGA GATTGGCGAG
TTGATGCGAC TGAAAGTATA G
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| Protein sequence | MQKFHTSPIK QNPPALQNKE HFYVNRNARE LFHLTDPEFL SLPSSGQESI ITSERQTAVI
NNFLKKLKGA DAKPVLPAQF LGMKLLHALF HSIMTKAIAL RQPDFLERLS GTLKEMLSEE
ESEEYLKRFV ASFPAQNVYA GTETPSEWLR LQENRKHVLE ESFLVWLNNQ NPALEQFSDL
LNDEKLTRES SYRKVIMTMR SSMQAMGPVG PDHIDLAELL TRPIKHAPTS ILEQLRYIRL
NWGDLLDESP LWGLLGGAID FIEDEDKYLF FEKIAQERAL RNDGHVFEKE VHVPEYSSLD
DANAPANYSI DSSWMPEVVM LAKSTYVWLD QLSKIYRRPV HRLQDIPDAE LDLIAERGFT
ALWLIGLWQR SFASQKIKQL QGNPEAKASA YALENYTISD DIGGYEGYHN LFQRAKQRGI
RLASDMVPNH TGMDSELVRN NPDWFLSSHT APYYNYSYNG PNLSSDSRYG IYLEDGYWNR
SDAAVTFKRV DYLTGDTRYI YHGNDGTIMP WNDTAQLNFL SAEVREGVIQ QILQVARMFP
IIRFDAAMVL AKRHIQRLWF PLHGHSAGVP SRSANAMSMS EFDAAIPEEF WREVVDRIHQ
KVPDTLLLAE AFWMLEGYFV RTLGMHRVYN SAFMHMLKKE DNANYRYLIK NTLEFDAEIL
KRYVNFMNNP DEDTAIAQFG RGDKYFGVCM MMLTMPGLPM FGHGQVEGFT EKYGMEYAKA
YYDEQPDENL VGRHYREIFP IMKKRPLFAE VRNFFLYDVY SPEGAVNENI FAYSNRLGEE
TALVVFNNCF EQATGWIKTS VGYLQDHEIR QSSLSEGLNI GRQENAFVIF RDHASGMEFL
RSCREIADNG LLVALDGYKY NVFLDFRVVT PSKLRPYDRL AAELNGRGLE SIERAALAMS
LSPLHRIITA ALTGELLPAV DECGVESDAI GLFESAVASL LNRAGATFSE IMEKPLAVPS
ALASKAAELY GRALLFPDLL KGDAHSGKLQ LALGLGSEGG LEYATLVRQW VMLDAVQQMV
AAAGEIHSNL IDDWLMSDAL RAIYPESGMI GIPAENLPDL LVCMLTPQPA AAGADEAAEA
SLLAPVKALS TLNQLHLGRM LQFDERHGKR WFREHRFSVL VAWLTLQELL KERYGVASDD
EVEVEVEVEV EQMERVVARW VEASGALDME AFLSGYEIGE LMRLKV
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