Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0427 |
Symbol | rho |
ID | 6462252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 410565 |
End bp | 411854 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642726712 |
Product | transcription termination factor Rho |
Protein accession | YP_002017370 |
Protein GI | 194335576 |
COG category | [K] Transcription |
COG ID | [COG1158] Transcription termination factor |
TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000196448 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGAACA ATTCGGTTTG TAAAGGTCTG GACATCAATA TGCTCCAGAA AAAGAAGGTT TCTGAACTGC ATGTTTTAGC CAAAGAGCTT GGAGTGATGG CTGCCGGTTT GCGAAAGGAG GAGCTGATTT TCAAGATTAT TGAGGCGCAG TCACAGAAAA ATACCGACTC CGAAAGCGGT AACGTCATGG TCAACACCGG CGTTCTGCAG GTCATCCCGG AAGGTTACGG CTTTTTACGG TCAGCCAATT ACAACTACCT TTCCTCTCCT GACGATATTT ATGTATCCCC GTCCCAGATC AAGCGATTTA ACATGCGTAC CGGTGATACC GTCTCCGGAC AAGTAAGGGC TCCAAAGGAG GGAGAACGCT TTTTTGCCTT GCTGAAGATC AACACCATTG ATGGTAACGA CCCTGAAATT ACACGAGAGC GCCCCTACTT CGAAAATCTG ACCCCCCTTT TTCCGCGAGA GCGCCTCAAG CTCGAAACCA AGCAGTCGGA AGCATGTGGC CGCATCATGG ATATTTTTAC CCCTATCGGT AAAGGGCAGA GAGGCCTGAT TGTGGCGCAG CCGAAAACCG GCAAAACGAT GTTGTTGCAG ATGATTGCCA ATGCCATTAT CAAAAATCAT CCAGAGGTCT ACCTTATTGT GCTGCTTATC GACGAACGCC CTGAAGAGGT GACCGACATG GCCCGGAGTG TTCCGGCAGA AGTGGTAAGC TCCACCTTTG ATGAGGATCC CGAACGTCAC GTTCTTGTAG CCGATATGGT GCTTGAAAAG GCGAAGCGGC TTGTGGAGGT TGGTCGTGAT GTGGTGGTGC TGCTCGATTC CATTACACGG CTTGCAAGGG CTCACAATAC CATCATTCCC CATTCAGGAA AAATCCTGTC AGGTGGTATC GATGCCAATG CCCTTACCAA ACCGAAACGC TTCTTTGGTG CAGCCCGTAA TATCGAGGAA GGCGGAAGCC TGACCATTAT TGCCACCGCG CTTATTGATA CCGGTTCCCG CATGGATGAT GTTATTTTCG AAGAGTTCAA AGGAACAGGC AATATGGAGC TTCTGCTCGA CCGTCGGCTT TCTGAGCGTC GTATTTTCCC ATCCATTGAT ATTCTTCGCT CCAGTACCCG TAAGGAAGAG CTGCTCTTTA CACAGGAAGA GCTTTCAAGG ACATGGTTGC TCAGAAAATA CCTTGCCGAC AAGAACCCTA TCGAGTGCAT GGAGTTCATG CGTGAGAAAA TGGCTGACAC CAAGGATAAC AAGGACTTTT TCAAATACAT GAATGCCTGA
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Protein sequence | MSNNSVCKGL DINMLQKKKV SELHVLAKEL GVMAAGLRKE ELIFKIIEAQ SQKNTDSESG NVMVNTGVLQ VIPEGYGFLR SANYNYLSSP DDIYVSPSQI KRFNMRTGDT VSGQVRAPKE GERFFALLKI NTIDGNDPEI TRERPYFENL TPLFPRERLK LETKQSEACG RIMDIFTPIG KGQRGLIVAQ PKTGKTMLLQ MIANAIIKNH PEVYLIVLLI DERPEEVTDM ARSVPAEVVS STFDEDPERH VLVADMVLEK AKRLVEVGRD VVVLLDSITR LARAHNTIIP HSGKILSGGI DANALTKPKR FFGAARNIEE GGSLTIIATA LIDTGSRMDD VIFEEFKGTG NMELLLDRRL SERRIFPSID ILRSSTRKEE LLFTQEELSR TWLLRKYLAD KNPIECMEFM REKMADTKDN KDFFKYMNA
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