| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_0229 |
|---|
| Symbol | |
|---|
| ID | 6460940 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 220139 |
|---|
| End bp | 223555 |
|---|
| Gene Length | 3417 bp |
|---|
| Protein Length | 1138 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642726524 |
|---|
| Product | MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor |
|---|
| Protein accession | YP_002017183 |
|---|
| Protein GI | 194335389 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins
[COG2201] Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTATACG CTCTTAAATT GATGAGGATC ATGACGAAAG AACCCTCCGG CAACCTTAAG
GCAAAAAAGC TTGATGGGGT CACCCTGAAG GCTGCAAATA ATTGTTTTCC TATTGTTGGT
ATTGGTGCTT CAGCAGGAGG ATTGGAGGCA CTGGAGATTT TTCTGAAAAA TGTTCCTTCC
CGGTGCGGTA TCGCCTTTGT GATTGTTCAG CATCTTGATC CTACTCACAA GGGGATTATG
GTGGAGTTGC TGCAGCGGGT TACCGATATC CCGGTCGTTC AGGTGAGAGA TCGCCTGAAA
ATTGAGCCAG ACCATGTCTA TGTTATTCCT CCAAACAAGG ACATGTCGTT GCTGCACGGA
GTATTGCATC TGCTTGCTCC GGTAGAGCCT CGAGGGCTTC GTTTGCCTAT TGATTTCTTT
TTTCGCTCAC TTGCAGATGA TTTGCAACAG CAGAGTATCG GTGTCATTCT CTCTGGAATG
GGCTCCGATG GAAGCCATGG CTTGCGTGCT ATAAAAGAGA ATGGTGGAGG TGTTTTTGTG
CAGGCACCCT CTTCGGCCAA GTTTGACGGA ATGCCTCGAA GTGCCATTGA GGCTGGCAGG
GTTGATGTTA TTGCTCCCGT TGAGGAGCTT CCTGCTAAAA TTATTACCTA TCTGCGGCAT
TTTCCATTAT TACCCTTACA ACAGGATCCT CCGCTGGAAG AGAGAGCGTT AAGCGGTCTG
GAAAAAGTGG TGATACTCTT GCGAACCCAT ACCGGGCAGG ATTTTTCGCT CTATAAAAAA
AGCACGATCT ATCGCCGCAT TGAGCGACGC ATGGGTATTC ACCAGATTGA AAAAATAGCT
GACTATGTTC GCTTTTTGCA GGAAAACCCC CATGAGACTG ATCTGCTTTT CAAAGAACTT
CTGATAGGGG TAACCAGTTT TTTCCGCGAT CCGGCAGTGT GGGAAATTTT GAAACTGAAG
GCAATTCCAG CCCTGCTTGC TGCTCATCCG GCTGGTGGTG TTTTGCGGGC TTGGGTGGTA
GGTTGTTCTT CTGGTGAGGA GGCCTATTCC CTTGCAATTA TATTTAAGGA GGCTGTTGCA
TCGGTCAAAC CTCTCGGGAA TTTCAAATTG CAGATATTTG CAACTGACCT GGATAAAGAT
GCTATCGACA AAGCCCGTAC AGGATGCTTT CCCTTGAACA TTTCGGCAGA AGTCTCAACT
GAAAGGCTGC AGCGTTTCTT TGAGCGCGAC AATAATAGCT ATAGAATATT GCGGGAGATC
CGTGAAACGG TAGTGTTTGC GCCGCAGAAT GTGATCATGG ATCCCCCTTT TACCAAGCTC
GATATTCTGG TTTGCCGAAA CCTGCTGATC TATATGGAGC CGGAGCTGCA GAAAAAGCTT
TTTCCACTTT TTCATTACAC TCTTAATCCT GGAGGCATTC TTTTTCTGGG AAGTGCCGAG
AGCCTTGGTT CATTTACCTC TCTTTTTAAA CCGATTGATG GTAAAACACG GCTTTTCAGC
AAGCTTCACC ACGGAGTTCG TCCAGAGCCC CTTGCTTTGC CCTTTTCATT TGCGCACTCC
TTGCCTGTGC CTCAGGACGT TGCGATTGAT CAGCCAAAAT CAAAATCCTC AGCCATCAAC
CTGCAGTCCA TGACAGATCA GTTCCTCCTC GAACATTATA CTCCTGCTGC CGTGTTGACC
AATGACAAGG GGGATATCAT TTATATCAGC GGCCATACAG GCAAGTATCT TGAACCGGCG
GCAGGAAAAG CCAACTGGAA TATTTTTGCG ATGGCACGCG AAGGGCTTCG CTATGAACTG
AATCTCATGT TCGGCAATGC ACTTCGTCAA CAAGGAGTGG CTACAAAAAG AGGACTGAGT
GTCAGCTCGA ACGGAGAAAC ACAGGCTGTC AATCTGACAA TCCGGCTTTT GGAAAAGCCG
GATGCTTTGC ATGGTCTGGT TTTGATTGTG TTTTCCGATG TCGAAAGGGT TGTGGGAGGA
ACATTACGGG ATCCGGCTCT CTCTGTTGAC AGAGGTGGAG CCCGGCAGAA ACTGCTCGAG
CAGGAATTGA GTCAGGCACG AGATGAGATC CTCAGTATCC GTGAGGAGAT GCAGACTTCA
CAGGAGGAGC TCAAATCAAC CAATGAAGAG ATGCAGTCGG CCAACGAAGA ATTGCAGAGC
ACTAACGAGG AGCTGACCAC ATCGAAGGAA GAGATGCAGT CTATGAACGA GGAGCTGCAG
ACGGTTAATC ACGAACTGCA ATCAAAGGTG AGTGATTTAT CGCAGGCCAA CAATGATATG
AAAAACCTGC TGAACAGTAC TGATATTGCA ACACTGTTTC TGGACGATGC ACTCAACATT
CGCCGTTTCA CCACACGGAC AGCGGCCATT ATCAAACTGA TTGCAAGTGA CGTAGGACGC
CCCATAACCG ATATTGTGAC GGAGTTGCAT TATCCCGCAT TAGCTGATGA TGCACGAGAG
GTTCTTCATA CTCTTGTGTA CAGTGAAAAA CAGGTTTCAG CCAGTAATGG GCGTTGGTTC
AGCGTGAAGA TTATGCCATA CCGAACACAA GAAAACCGCA TTGTCGGTCT GGTGATCACC
TTCAGTGATA TCAGTGTAGC AAAAAAGCTC GAAGAGAGCC TGCGGGAGAG CGAAGAGCGT
CTTCGGGCAG CAATTGAAAG TTCGGGTATT ATCGTCGCTG CTGTTGACAA GGAGTTTCGT
TATATCTGGT TCTATGATCC CCGCCATATG TTCCATGCAT CAACTTCAAT CGGAATGCGG
GATGAGGAGC TTCCTGGGAT GCAGAACGCC GCTGAACTGA TGGAAATCAG GCAAAAAGTT
ATTGCAACAG GGGAGAGCGT GCACAGGGAT TTGATGTTGA AGCAGGCCGA CGGTTGCCGC
AGTTTTTATA CACTCATTGC AAGGCCTCTG AGAGATGCCG GAGGTAACGT GATCGGAGTG
ATTACAGTCG CCGCAGACAA CACTGCCCGC AAAGAGGCTG AGGTGGCCCA GAAAGAGAGT
GAAGATCGTT TTCGCCTTTT GTTTGACGCA ATACCCGAGG GTGCTTTACT TCTTGATGCG
AAGGGCAGAA TTATTATGGT AAATCCAGAG GCAGAACGTA TTTTGGGCTT CTCTCGTGAA
GAGATGCAGG GGAAAACCTC TTCGGAGCTT CGCTGGAAAA TCGTTCGGGA AGATGGTTCT
GATTTTCCGT TCGAAGAGCA TCCGGCCTTT GTCGCATTGC GTACCGCCCA GCCCGTCAGG
GGAGTCATTA TCGGTGTGTT TCAACCCGGA CACAATCATT GCCGATGGAT CCGCATCAAT
GCACAGCCAT GGTTCCAGGC AGGAATGGAA GCACCTTTTC AGGTTTACAT GACGTTTGTC
GATATCAAAT CTTTTCGGTC TTGTCCGGAA ATTAAGCAGG AGGAAAACCC TTCATGA
|
|---|
| Protein sequence | MVYALKLMRI MTKEPSGNLK AKKLDGVTLK AANNCFPIVG IGASAGGLEA LEIFLKNVPS
RCGIAFVIVQ HLDPTHKGIM VELLQRVTDI PVVQVRDRLK IEPDHVYVIP PNKDMSLLHG
VLHLLAPVEP RGLRLPIDFF FRSLADDLQQ QSIGVILSGM GSDGSHGLRA IKENGGGVFV
QAPSSAKFDG MPRSAIEAGR VDVIAPVEEL PAKIITYLRH FPLLPLQQDP PLEERALSGL
EKVVILLRTH TGQDFSLYKK STIYRRIERR MGIHQIEKIA DYVRFLQENP HETDLLFKEL
LIGVTSFFRD PAVWEILKLK AIPALLAAHP AGGVLRAWVV GCSSGEEAYS LAIIFKEAVA
SVKPLGNFKL QIFATDLDKD AIDKARTGCF PLNISAEVST ERLQRFFERD NNSYRILREI
RETVVFAPQN VIMDPPFTKL DILVCRNLLI YMEPELQKKL FPLFHYTLNP GGILFLGSAE
SLGSFTSLFK PIDGKTRLFS KLHHGVRPEP LALPFSFAHS LPVPQDVAID QPKSKSSAIN
LQSMTDQFLL EHYTPAAVLT NDKGDIIYIS GHTGKYLEPA AGKANWNIFA MAREGLRYEL
NLMFGNALRQ QGVATKRGLS VSSNGETQAV NLTIRLLEKP DALHGLVLIV FSDVERVVGG
TLRDPALSVD RGGARQKLLE QELSQARDEI LSIREEMQTS QEELKSTNEE MQSANEELQS
TNEELTTSKE EMQSMNEELQ TVNHELQSKV SDLSQANNDM KNLLNSTDIA TLFLDDALNI
RRFTTRTAAI IKLIASDVGR PITDIVTELH YPALADDARE VLHTLVYSEK QVSASNGRWF
SVKIMPYRTQ ENRIVGLVIT FSDISVAKKL EESLRESEER LRAAIESSGI IVAAVDKEFR
YIWFYDPRHM FHASTSIGMR DEELPGMQNA AELMEIRQKV IATGESVHRD LMLKQADGCR
SFYTLIARPL RDAGGNVIGV ITVAADNTAR KEAEVAQKES EDRFRLLFDA IPEGALLLDA
KGRIIMVNPE AERILGFSRE EMQGKTSSEL RWKIVREDGS DFPFEEHPAF VALRTAQPVR
GVIIGVFQPG HNHCRWIRIN AQPWFQAGME APFQVYMTFV DIKSFRSCPE IKQEENPS
|
|---|
| |