Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0122 |
Symbol | |
ID | 6461859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 135687 |
End bp | 138848 |
Gene Length | 3162 bp |
Protein Length | 1053 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642726432 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_002017092 |
Protein GI | 194335298 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.62255 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCGGAT TTTTTATAGA GCGACCCGTC TTTGCCTGGG TGATCTCCAT CTGCATCATG CTCGGAGGAA TCATCGCCAT CAATACCCTG CCGGTTGAGC AATATCCGCG CATCGCGGCG CCGACCATCA ACGTCAGCGC CACCTATCCC GGCGCATCTG CCGAAGCGGT TGAAAACAGC GTGACGCAGG TTATTGAACA GGCTCTCACC GGTATCGACC ATCTCCGCTA CTTCAGCGCC GGGAGCGATT CGAACGGCAA CGTCACCATC ACGGTGACCT TCGAGCCCGA AGCTAACCCC GATATTGCCC AGGTGCAGGT GCAGAACAAG TTGCAGTCGA TCATGTCGAA CCTTCCCCAA CAGGTGCAGC AGCAGGGCAT CAAGGTGACC AAGGGAGATA CCGGCTTTCT GATGGTCGTG GGCGTCTATT CGGACGATCC CCGGATCGAT GAATATGCGA TGAACGATTT CATCAACTCG AAACTCCTCG ATCCGCTGAG TCGCGTACCC GGCGTCGGGA ACATCCAGGT ATTCGGGCAG CCCTACTCGA TGCGGATCTG GCTTGATCCC CACCGGATGG CGAGCTTCAA CCTCACCACC ACCGAGGTAC AGGCAGCTAT CACGGCACAG AATGCCGATG TCTCTGCCGG GCAGTTGGGA GGTACACCCT CGGTTCCGGG CCAGCAACTG AATGCCACCA TTACAGCGCA GTCGCGCCTG AAGAGCGTCG GGGATTTCGA AAAGATCATG CTGAAGGTCA ATAGCGACGG CTCGCAGATC CGCCTCAGGG ATGTGGCCCG CGTCGAACTC GGTGTGCAGA ACTACGACAT GACCACGCGC TTCAACGGCA AACCGGCTGC CGGCATGGCC ATCACCCTGG CGACCGGGGC AAATGCCCTG AACACCGCCA CTCTTGTCAA AGCGAAAATG AGCGCCCTGA AGCCGCTTCT CCCGCCGGGT GTGCAGATCG TCTACCCATT CGACACGACA CCATTCGTCA AGACATCGAT CGAAGGGGTT GTTCATACCC TGATTGTGGC AGTCATCCTC GTCTTCCTGG TCATGTTCCT GTTTCTCCAG AACTTCCGGG CCACACTGGT ACCCACCATC GCGGTTCCGG TTGTGCTGCT CGGTACCTTC GGGGTGATGT CGATGTTCGG CTTCTCCATC AACACCCTCA GCATGTTCGC CATGGTCCTC GCCATCGGAT TGCTTGTCGA TGACGCCATT GTCGTGGTTG AGAACGTCGA ACGCATCATG GAAGAGGAGC GACTCTCCCC GCTGGAGGCG ACCAGGAAAT CGATGAAGCA AATATCGAGC GCACTGATCG GTATCGCCCT TGTGCTCTCG GCCGTCTTCG TGCCGATGGC CTTCTTCAAA GGCTCCACGG GGACCATCTA CCGCCAGTTC TCGATCACCA TCGTCTCGGC GATGCTGCTC TCGGTGCTGG TTGCGCTGAT CCTGACACCG GCTCTCTGCG CCAGCCTCCT CAAGCCGGTC AGAGCGGATG GCCATCTCTA CGGTGCTGGC CCTCTCGGGC GCTTTTTCGC CTGGTTCAAC GGCATGTTCA ACCATAACCG GGAACGCTAT GTCAACGGCG CCCGTGTTAT GACGGAACGG GTCAAGCGCT CGCTGCTCGC TTTTATGCTG ATCGTGGTGC TGCTTGGGAT CGTTTTGACG CGCATCCCGA CCTCGTTTCT GCCGGACGAA GATCAAGGCT TCCTCTTCGT CCAGCTTTCC ACCCCATCCG GAGCGACCAA GGAGCGGACA CTCGAAAGCG TGAAGAGGAT GGAACGCTAC CTCCTCAATC AGGAAAAAGA GAGCATCGAA AGCATCTTCA GCGTCACCGG TTTCAGTTTC GCGGGTCAGG GCCAGAACTC GGCCATGGGT TTCGTCCAGC TCAGGGACTG GTCGAAACGC AAGAACAAGG GTCAGGATGT TGCCTCGATC GCCGGAAGAA CCATGGGCGC CCTGTCGAGC GTGAAGGATG CCATGATCTT TGCATTTTAC CCGCCAGCCG TCATGGAGCT CGGCAACGCC TCGGGTTTCG ACCTTCAGCT TTTAGACCGG ACCGGCAAGG GTCATGAGGC TCTCATGGCC GCCCGGAACC AACTGCTCGG AATGGCTGCG AAGAACCCCT CCCTGAGCGG CGTGCGTCCC AATGGCCTTG AAGATGTGCC ACAATTCAAA ATCGATATCG ACCACGAACA GGCAAGCGCC TTCGGGGTAT CGATCGCCGA CATCAACTCG ACGCTGCAGA CCGCCTGGGG TTCATCTTAT GTGAACGATT TCGTGCATGA GGGGCGCATC AAGAAGGTGT TCATGCAGGG AGACGCGCCG TACCGCATGA ACCCGGGGGA CGTCAACATC TGGCACGTCC GGAACTCCAG TGGTGACATG GTTCCCTTCT CATCGTTTTC CTCGGGGCGG TGGAGCTTCG GCTCACCCAA GCTCGAACGG TTTAACGGCA TCTCGTCGGT CAATATCCAG GGAGCCCCGG CGCCAGGCGT AAGCTCGGGC GATGCCATGG CCATCATGGC AAACCTGGCG GAGAAACTCC CTGAAGGTTT CGGCGTCGAA TGGACCGGCC TCTCCTACGA AGAGCGTGCT GCAGGCCAGC AAACGCTGCT GCTCTACACG CTCTCCCTGC TTTTCGTCTT TCTTTGTCTG GCAGCTCTTT ACGAAAGCTG GAGCGTGCCG ATTGCCGTCA TGCTGGTAGT CCCGCTCGGG GTCCTCGGCA CCGTTCTGGC AACATTTCTC TCAGGCCTTT CAAACGACGT CTTCTTCAAG GTCGGCCTGT TGACAACTGT TGGCCTGACG GCGAAAAATG CCATCCTCAT CGTGGAGTTC GCCAAAACGC TCTACGAAAG CGGAATGAGC CTGCAGGAGG CGGTACTCTC TGCAGCAAGT CAGCGACTTC GACCGATCAT CATGACCTCC ATGGCATTCA TCCTTGGTGT CACGCCGCTC GCCTTCTCCT CCGGAGCAGG ATCGGCAAGC CAGCACGCCA TCGGCATCGG CGTAATCGGA GGCATGTTGT CCGGTACGGT ACTGACGATC TTCTTTGTGC CGCTCTTCTT CATCCTCGTA CAATCCCGGT TTGCCCGAAA GAGGGTAACC GACACCGCAG TAACCCAAAA CAAACAAGGG ATCGAACCAT GA
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Protein sequence | MSGFFIERPV FAWVISICIM LGGIIAINTL PVEQYPRIAA PTINVSATYP GASAEAVENS VTQVIEQALT GIDHLRYFSA GSDSNGNVTI TVTFEPEANP DIAQVQVQNK LQSIMSNLPQ QVQQQGIKVT KGDTGFLMVV GVYSDDPRID EYAMNDFINS KLLDPLSRVP GVGNIQVFGQ PYSMRIWLDP HRMASFNLTT TEVQAAITAQ NADVSAGQLG GTPSVPGQQL NATITAQSRL KSVGDFEKIM LKVNSDGSQI RLRDVARVEL GVQNYDMTTR FNGKPAAGMA ITLATGANAL NTATLVKAKM SALKPLLPPG VQIVYPFDTT PFVKTSIEGV VHTLIVAVIL VFLVMFLFLQ NFRATLVPTI AVPVVLLGTF GVMSMFGFSI NTLSMFAMVL AIGLLVDDAI VVVENVERIM EEERLSPLEA TRKSMKQISS ALIGIALVLS AVFVPMAFFK GSTGTIYRQF SITIVSAMLL SVLVALILTP ALCASLLKPV RADGHLYGAG PLGRFFAWFN GMFNHNRERY VNGARVMTER VKRSLLAFML IVVLLGIVLT RIPTSFLPDE DQGFLFVQLS TPSGATKERT LESVKRMERY LLNQEKESIE SIFSVTGFSF AGQGQNSAMG FVQLRDWSKR KNKGQDVASI AGRTMGALSS VKDAMIFAFY PPAVMELGNA SGFDLQLLDR TGKGHEALMA ARNQLLGMAA KNPSLSGVRP NGLEDVPQFK IDIDHEQASA FGVSIADINS TLQTAWGSSY VNDFVHEGRI KKVFMQGDAP YRMNPGDVNI WHVRNSSGDM VPFSSFSSGR WSFGSPKLER FNGISSVNIQ GAPAPGVSSG DAMAIMANLA EKLPEGFGVE WTGLSYEERA AGQQTLLLYT LSLLFVFLCL AALYESWSVP IAVMLVVPLG VLGTVLATFL SGLSNDVFFK VGLLTTVGLT AKNAILIVEF AKTLYESGMS LQEAVLSAAS QRLRPIIMTS MAFILGVTPL AFSSGAGSAS QHAIGIGVIG GMLSGTVLTI FFVPLFFILV QSRFARKRVT DTAVTQNKQG IEP
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