Gene Ppha_0067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_0067 
Symbol 
ID6462692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp66499 
End bp68598 
Gene Length2100 bp 
Protein Length699 aa 
Translation table11 
GC content54% 
IMG OID642726369 
Producttranscriptional regulator, NifA subfamily, Fis Family 
Protein accessionYP_002017040 
Protein GI194335246 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCAACT CATCCGTCCA TGAGGCCAGC ATGCTGATGC AGTACATCAG CGATGCCGTC 
GGCTCCATCC GTGATCCCCA GGATCTTTTT CGAACGGTCA TCGACAAGCT TCGCCTTGTC
TTCGAGTTTG ATTCCGCCGC CATTCTCACC TTTGACAAAG AGTGCCGGTA CAGTAATCTC
TTTTTTGAAA TGCTCCGCTT TCAGCTTCCT GAAACCATTG ATCGTAACAA GAGGCTGATT
GCAGGCTCCT GGATTGAGCC GCATCTTGGT GATCTCTCCG TTTCAGTTAT CGGTATCGAG
GAAGCTCTGG AGCTCTATCC TGCGGATATG CCGCTTCCGC AGATCCTCTT TGACCTCGGC
ATGCGGCAGG TGGTGCTTTC GCCACTGCGT ACCGGGGGAA AGGGTATCGG CTTTCTCTGT
TTTGTTTCAA AGGATGAAAA AAGATGGTCA GAGAGTGAAA AAGAGCTGCT TGCCACACTT
TCATCACCGA TCGCCGTTGC GGTCAGCAAC GCCCTTGCCT ATGAGGAGCT CCGGCAGCGT
GAAGCGCAAA CCGCTATGCA ACTTGCCGTC AACAATGTTC TGCTGACCAT CAAGGATAGA
AACCGGATGC TGTTGGCCGT TTGCGAGCAG ATCGACAAGC TTGTGCCCTG CACTTTCCTT
GGCATTCGCG TCATGGGCGA AGATGGAAAC TACCGCATCT TTGATAATTT CATGCGTGAT
CAGAGCGGGG GTTTTGTGCC GGTCTCTGCG ATTGAGGTAC TTGATGTTGA TGATATTGAG
GCGATAGCAA AGGAAAGTTT TTCCCTGATT TCCAATTCAG GCTGTTTTTG TGGTGATGCG
TTTCTCCGGC TTTCCCGGCA GTACCGGATT CTCGCTCTCG TCAAAGAAAA ATACGGTATC
TGCTCCCTGC TTACGGTTCC GCTCTGGGAT ACACCGGGAA GTCGTGCCGG ACTGATTATC
TCCGACACCT CCCGCTCGTT CGAAGAGCAT GACCAGGCAA CCGTCAACCT GATCGTGCCC
CAGCTCTCTT TGGCCTTGCA GAACTATCTC GCCTTTGAGG AGATTGATGA GCTGCGCCGC
AAGCTGGAGG GCGAGCGCAC CTGCCTCATT GAGGAGATCA AGGCAGCGCA TAACTTTGAG
GAGATCATCG GTAACAGCGC CTCCCTTTCT GCGGTATTGC GCCGGGTGAG CCAGGTTGCT
CCTACCGATG CCACAGTGCT GATTCAGGGT GAAACCGGCA CCGGCAAGGA GCTTTTTGCC
CGAGCCCTGC ACAATCTTTC AGCCCGCAGC AAGCGTGCGT TAATCAAGGT TAACTGTGCG
ACTTTGCCTG GGCCGCTCAT CGAATCGGAG CTTTTCGGTC ACGAAAAAGG GAGTTTTACC
GGCGCCACAG AACGCCGGAT CGGCAAGTTT GAGCTGGCCG AGGGGGGGAC GATTTTTCTG
GATGAAATTG GTGAACTCCC TCTGGAGCTG CAGGCAAAGC TGCTTCGCGT GCTTCAGGAG
CGTGAGCTTG AGCGGCTTGG CGGACGGCAG GTGATCAAGG TTGATGTGCG TGTTATTGCG
GCCACCAACC GTGATCTCGC GCGTGAGGTT GCCGAAGGGC GCTTCCGTGA AGATCTCTTT
TTTCGGCTCA ACGTCTTTCC CCTTTTTATT CCGTCACTCT CTGAACGCCG GGAGGATATT
GCCATGCTTG CCGCCCATTT TGCCGCCAAA TTTTCAAGGG AGTTCGCCAG GCCGCTTCGC
ACCTTCAGGG AGAGCGATAT GCAGCGTCTG GTCGCTCGGG AATGGAAGGG CAATATCCGC
GAGCTTGCCC ACCTGATCGA GCAGGCGGTT ATTGTTTCTG AAGGGGCGTC GCTGGATTTT
TCAGCACTCC TCTCATCGTT GCCCTCCGTT CAGGATGCGC AGCACTCTCT GCGACAGAAA
ACCATGCGCG ATTTTGAATC GGATGTAGCC ATGATGGAGC GGGAGTTGAT TCTGGATGCT
CTCGACCACT CAAACGGCCG GGTGAGCGGT GAGGGTGGCG CTGCAGAAAA GCTTGCCATG
CATCCGAAAA CGCTCTACTC CCGTATTGAC AAGCTCGCTA TCCGTAAACG ATACCAGTAG
 
Protein sequence
MSNSSVHEAS MLMQYISDAV GSIRDPQDLF RTVIDKLRLV FEFDSAAILT FDKECRYSNL 
FFEMLRFQLP ETIDRNKRLI AGSWIEPHLG DLSVSVIGIE EALELYPADM PLPQILFDLG
MRQVVLSPLR TGGKGIGFLC FVSKDEKRWS ESEKELLATL SSPIAVAVSN ALAYEELRQR
EAQTAMQLAV NNVLLTIKDR NRMLLAVCEQ IDKLVPCTFL GIRVMGEDGN YRIFDNFMRD
QSGGFVPVSA IEVLDVDDIE AIAKESFSLI SNSGCFCGDA FLRLSRQYRI LALVKEKYGI
CSLLTVPLWD TPGSRAGLII SDTSRSFEEH DQATVNLIVP QLSLALQNYL AFEEIDELRR
KLEGERTCLI EEIKAAHNFE EIIGNSASLS AVLRRVSQVA PTDATVLIQG ETGTGKELFA
RALHNLSARS KRALIKVNCA TLPGPLIESE LFGHEKGSFT GATERRIGKF ELAEGGTIFL
DEIGELPLEL QAKLLRVLQE RELERLGGRQ VIKVDVRVIA ATNRDLAREV AEGRFREDLF
FRLNVFPLFI PSLSERREDI AMLAAHFAAK FSREFARPLR TFRESDMQRL VAREWKGNIR
ELAHLIEQAV IVSEGASLDF SALLSSLPSV QDAQHSLRQK TMRDFESDVA MMERELILDA
LDHSNGRVSG EGGAAEKLAM HPKTLYSRID KLAIRKRYQ