Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0036 |
Symbol | |
ID | 6463029 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 33575 |
End bp | 35827 |
Gene Length | 2253 bp |
Protein Length | 750 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 642726338 |
Product | methyl-viologen-reducing hydrogenase delta subunit |
Protein accession | YP_002017010 |
Protein GI | 194335216 |
COG category | [C] Energy production and conversion |
COG ID | [COG1148] Heterodisulfide reductase, subunit A and related polyferredoxins [COG1908] Coenzyme F420-reducing hydrogenase, delta subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00274533 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGACG ATAATAAAAT TGGAGTATAC CTCTGTACCG ACTGCGGAAT CGGAGAGATG TTGAATGTTG ACGAACTCGA AGCCGTAGCA AAAAAAGAGT TCAAGGTACC CGTCTGCAAA AAACATCCGT TTCTCTGTAG CCGGGAAGGT GTTCAGATAA TCAAGGACGA CATCAATAAC GGTGAGGTCA ACAAGATTGT CATTGCCGCA TGTTCGCCAA GAGTGAATAC CGATGTTTTT AATTTCGACC CGTTAAAGTA TGTAACCGAA CGGGTCAATC TGAGAGAACA GGTAGTCTGG GTCAAGTCCT CGACAGAAAA GACAAACGAG GGAAGCCAGA TGATGGCTGC CGACTATATG CGGATGGGCA TAACAAGGAT TGGCAAATCA AGTATCCCTG AACCGAAGTA CACCGATGTC AACCGGACAC TGCTTGTGGT CGGAGGAGGC GTTACCGGCC TTACTGCAGC GCTTGAGGCA TCAAAAGCTG GCTATAAATC CGTGCTTGTT GAAAAAGCAC GGGAGCTTGG AGGCCAGGCG AAAAAGATGT ATAAAGTCTT CCCGACTGCA CCACCCTTTG CGGAGCTTGA AAAGCCGACA ATACTCGCAA AAATCGAGGA GGCACGGAAC GACGGAAACA TCAGCATCCA TACGGATACC ACCATTGCTT CCATAGAGGG CGGTCCAGGG ATGTACAAGG TCACGATTAA CAAACAGGGT ACAACCGAGA GCTTCGAAGC TGGCGCCATT GTCCTTGCAA CAGGCTGGCG TCCCTACAAT CCTGATAACC TTGCGCATCT CGGTTACGGA AAATTCCGCA ACGTGATCAC AAACCTTCAG ATGGAGGAAC TTGTCACCAA AGGCAACGGC AAGGTACTCA GACCCTCCGA CGGCAAACCG GCAAAAAACG TTGTTTTTAT CCAGTGTGCA GGTCAGAGAG ATGAAAAGCA TGTTCCCTAC TGTTCCTCTG TTTGTTGCAA TGTATCGCTC AAACAGGCCA AATATGTCAG AGACTCGGAT CCGGATGCTG GTGCATTTGT CATATACAAA GACATGCGTA CCCTCGGGCT GTACGAAAAC TTCTACAAGA CATCCCAGGA TGACGAAGGC GTTTTTCTGA CCAAAGGCGA AGTTCTTGGT CTTGAAGAGG GTCCGGGAGG AAATATATAC GTCGAAATCA ACAACCATCT TCTCGGCAGA ACGATGAAGA TCAATGCTGA TATGGTCGTA CTTGCCACCG GCATGGTATC TGGCATGGTT CCTGAAGACA GAGGTGTAAA TAATCTCACT CCTGAGTACA TCGGCAATTT TGTCAAGAGA GAAACCTCTG ATGGAGAAAT CGTAGAGCTG GAGCCACTAA GTCTTGCCCT GAACCTGAAA TACCGCCAAG GCCCTGAAAT GCCGCATCTC AAATGGGGCT TTCCTGATTC ACACTTTATC TGCTTCCCTT ACGAGACCAA AAGAACGGGC ATCTATGCCG CTGGCGCTGT CCGCCATCCG ATGGACGCAG TGCAGTCGGT AGGCGATGCA ACGGGCGCAG CACTTAAAGC TATCCAGTGT ATCGAACTCA CGGCGCAAGG GCGTGCCGTG CATCCCAGAA CCTGGGATCG TACCTATCCG GAAATCAGGG TTGAAAGCTG CACCCAATGC AGACGATGCA CGGTCGAATG CCCCTTTGGA GCCTACGATG AGGAGAAAGA TGGCACCCCG CTTCTCTATC CTTCACGCTG TCGTCGCTGT GGAGTATGCA TGGGCGCATG TCCACAACGG GTTATCTCAT TCAAGGACTA CAGTGTTGAC ATGATTTCCT CTGTCCTGAA ATCAATCGAA GTCCCTGACT CGGGTACCTT TATTCTCTGT TTTGTCTGTG AAAACGACGC CTATCCCGCA CTTGACATGC TGGGACTGAA CCGGGTTGGC CTGAATACCA ATTTCAGGTT TATTCCCTTA CGCTGCCTCG GTGGCCTGAA TCTGGTCTGG ATTGCCGATG CCCTCTCACA GGGTGTTGAC GGTATCCTGC TTCTCGGTTG TAAATTCGGA GATGACTATC AGTGCCACTA TATCAAGGGC AGTCAGATGG CAAATGAACG ACTTGGAAAG GTTCAGGAGA CTCTTAGTCG TCTGATGCTT GAATCGGAAA GGGTTGAACA GGTACAGCTT GCTATCAATG AGTGGGAAAA ACTGCCTGGC ATTATCGAGG AGTTCTCAAA AAAAGTTGAA GCAATTGGTG AAAATCCGTA CAAAGGATTC TAA
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Protein sequence | MADDNKIGVY LCTDCGIGEM LNVDELEAVA KKEFKVPVCK KHPFLCSREG VQIIKDDINN GEVNKIVIAA CSPRVNTDVF NFDPLKYVTE RVNLREQVVW VKSSTEKTNE GSQMMAADYM RMGITRIGKS SIPEPKYTDV NRTLLVVGGG VTGLTAALEA SKAGYKSVLV EKARELGGQA KKMYKVFPTA PPFAELEKPT ILAKIEEARN DGNISIHTDT TIASIEGGPG MYKVTINKQG TTESFEAGAI VLATGWRPYN PDNLAHLGYG KFRNVITNLQ MEELVTKGNG KVLRPSDGKP AKNVVFIQCA GQRDEKHVPY CSSVCCNVSL KQAKYVRDSD PDAGAFVIYK DMRTLGLYEN FYKTSQDDEG VFLTKGEVLG LEEGPGGNIY VEINNHLLGR TMKINADMVV LATGMVSGMV PEDRGVNNLT PEYIGNFVKR ETSDGEIVEL EPLSLALNLK YRQGPEMPHL KWGFPDSHFI CFPYETKRTG IYAAGAVRHP MDAVQSVGDA TGAALKAIQC IELTAQGRAV HPRTWDRTYP EIRVESCTQC RRCTVECPFG AYDEEKDGTP LLYPSRCRRC GVCMGACPQR VISFKDYSVD MISSVLKSIE VPDSGTFILC FVCENDAYPA LDMLGLNRVG LNTNFRFIPL RCLGGLNLVW IADALSQGVD GILLLGCKFG DDYQCHYIKG SQMANERLGK VQETLSRLML ESERVEQVQL AINEWEKLPG IIEEFSKKVE AIGENPYKGF
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