Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0026 |
Symbol | dapD |
ID | 6462778 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 24313 |
End bp | 25176 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642726328 |
Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
Protein accession | YP_002017000 |
Protein GI | 194335206 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000276826 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGACAGT ATGATTCTTT AAAAGATGCG ATTTTGGGTT TTTCTTCACT TGGCGCGTCT GCGCTCTGGG AAATTCCGGA AGCAAGGCGT GTGTTTAATC AGTTCAAGCA GTTGCTTAAT GAGGGGCTGG TGAGGGCTGC GGAAAAATTT GAAGGAGAGT GGCGGGTCAA CTCCTGGGTC AAGGAGGGAA TTTTGCTTGG TATGCGCCTT GGCAGATTGC AGGAGAGTTA TGTTGCGCTT GATGAGCATG AGACAGGGTT TGCTTTTATC GACAAGGATA CCTATCCGCT TAAAAAGATT ACGCTTGCCA ATAATGTCCG TATTGTTCCC GGAGGATCGG CTGTGCGTGA TGGATCATAT CTGGCGCCTT CGGTGGTGAT GATGCCTCCT GCTTATGTCA ATGTTGGTGC CTATGTTGAT GAGGGTACCA TGATAGATTC CCATGCCCTT GTGGGTAGTT GTGCACAGGT CGGTAAAAAG GTGCATCTTT CGGCTGGTGT TCAGGTTGGT GGTGTGCTGG AGCCGATCGG CGCCATGCCG GTCATTATTG AGGACGAGGT GATGGTCGGG GGTAACTGTG GCATTTATGA GGGCACCATT GTGAAGGAGC GTGCGGTTAT TGGCACCGGG GTGATTCTTA ATGGGTCAAC TCCTGTTTAC GATCTTGCCC TGAATACCAT TTACCGCAAA ACTTCCGAAT CTCCGCTGGT GATTCCTGCC GGGGCGGTTG TTGTTGCCGG ATCACGAAAG ATCAAGGGGG ATTTTGCTGC TGAACACGGG CTTTCCATCT ATACACCGCT GATTATCAAA TACCGTGACG ACAGGACCGA TAGCGCTACA GCCCTTGAAG AGGCTCTCAG ATAA
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Protein sequence | MGQYDSLKDA ILGFSSLGAS ALWEIPEARR VFNQFKQLLN EGLVRAAEKF EGEWRVNSWV KEGILLGMRL GRLQESYVAL DEHETGFAFI DKDTYPLKKI TLANNVRIVP GGSAVRDGSY LAPSVVMMPP AYVNVGAYVD EGTMIDSHAL VGSCAQVGKK VHLSAGVQVG GVLEPIGAMP VIIEDEVMVG GNCGIYEGTI VKERAVIGTG VILNGSTPVY DLALNTIYRK TSESPLVIPA GAVVVAGSRK IKGDFAAEHG LSIYTPLIIK YRDDRTDSAT ALEEALR
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