| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_2084 |
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| Symbol | trmE |
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| ID | 5051971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 2155503 |
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| End bp | 2156876 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640472259 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_001156859 |
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| Protein GI | 145590262 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.103263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGACCA GAAAGGTGCC CATCATTGCC GTAGCCACCG CCCCGGGTAA AGCCGGAGTG
GGCGTTGTTC GCATTAGTGG ACAAGGCCTA GGTGAGCTAG TCGAAACCCT TTTTCACAGA
TCTCTTGCGC CACGTCAGGC AACTCTGCTG ACCTTCTGCG ATGCAGACAA TCAACCGATC
GATCAACTTC TCGCTATTTA TTTTGTTGGG CCCGCATCCT TTACTGGCGA GGATGTGCTT
GAGTTGCAAT GCCATGGAGG GCCGCAGCTT TTGGAGCTAG TGATGAAGCG CTGCCTAGAG
CTAGGAAAAG CCCTTGGCTT AGTGATCGCT GAGCCCGGTG AGTTCACTTT GCGTGCATAT
CTAAACAACA AGGTTGATTT GGCTCAAGCA GAAGCAATAG CCGATCTCAT TGACGCACAA
AGTGAGGCTG CAGTTAGGGG TGCCGCACGT TCTTTACAGG GCAGTTTTTC TGAAGACATT
AATGGACTCA TTGAGGAAAT CACTCAATTA AGAATCTTGG TTGAGTCGAC CTTAGACTTT
CCTGAAGAAG AAATTGAGTT TTTGGAAAAC GCTCAAGCGC GTGAAAGGCT CGCTGCTGTT
AAGAAAAAGC TCGAGGCGTT GCAGGCTGGG GCTAAGCAAG GAAAAATCTT ACGCGATGGA
ATTCAGTTGG TTCTGGCGGG CGCACCCAAT GTGGGAAAGA GTTCTTTGCT CAATAGGCTT
GCTGGTGAAG AGGTGGCAAT TGTTACTCCA ATAGCAGGCA CTACCCGAGA TCGAGTCAAA
GAAAGTATTC AAATCGAGGG TGTGCCGATG CACATTATCG ATACCGCCGG GCTGAGGAAA
ACAGTAGATG AAGTTGAGGC CAAAGGCATC GAAAGAACCT GGGAGGCTAT TCGTTTGGCT
GATTTGGTTA TCTTCCTGGG GGCGCCAAAT GCAGAGCCGG GACACGAAAG CTTGCGGGAA
GAAATTTTAG GGGCGCTACC AGCCAAGTGC CCTATTTTGG ATGTTATCAA TAAATCAGAC
CTGATTGAGG GTGGTTTGGC TGTTAGTTCG AGCAACGAAG CCTCCCCTCT TTTAATTTCA
GCCAAAACAG GCGCTGGTAT TGATGCCTTA AAACAAAAAA TTCTTCATGT AGTTGGATGG
AATGGCGCCC AGGAGGGGGC AATTGTGTCC CGCAGAAGGC ATTTAGATTG TCTTGAGCGC
GCGGCAGAAC ATATTGCTAA ATCAGAGCAA TTCGCCGCAA ATGGCAACAA TTCACTAGAA
TTATTCGCAG AAGAGCTCTT TTTGGCACAA AATCACCTTG GCCAGATTAC CGGAAAGCTA
TTGCCGGACG ACCTTTTAGG GAAAATCTTT AGCCAATTTT GTATTGGTAA ATAA
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| Protein sequence | MMTRKVPIIA VATAPGKAGV GVVRISGQGL GELVETLFHR SLAPRQATLL TFCDADNQPI
DQLLAIYFVG PASFTGEDVL ELQCHGGPQL LELVMKRCLE LGKALGLVIA EPGEFTLRAY
LNNKVDLAQA EAIADLIDAQ SEAAVRGAAR SLQGSFSEDI NGLIEEITQL RILVESTLDF
PEEEIEFLEN AQARERLAAV KKKLEALQAG AKQGKILRDG IQLVLAGAPN VGKSSLLNRL
AGEEVAIVTP IAGTTRDRVK ESIQIEGVPM HIIDTAGLRK TVDEVEAKGI ERTWEAIRLA
DLVIFLGAPN AEPGHESLRE EILGALPAKC PILDVINKSD LIEGGLAVSS SNEASPLLIS
AKTGAGIDAL KQKILHVVGW NGAQEGAIVS RRRHLDCLER AAEHIAKSEQ FAANGNNSLE
LFAEELFLAQ NHLGQITGKL LPDDLLGKIF SQFCIGK
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