Gene Pnuc_2078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_2078 
Symbol 
ID5052775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand- 
Start bp2147285 
End bp2148283 
Gene Length999 bp 
Protein Length332 aa 
Translation table11 
GC content48% 
IMG OID640472253 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_001156853 
Protein GI145590256 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTG TTTTTGCCGG AACCCCAGAG TTTGCTGCGC AAGCAATGCG AGCTATACAC 
GCTGCTGGCC ATGAAATTGT TTTGGCGCTG ACGCAACCAG ACCGCCGTGC TGGCAGGGGG 
ATGCACTTGC AAGCAAGCCC TGTTAAAGAG TTTGCGCTGG AAAAAAATAT TCCTGTCTTA 
CAGCCTGAGA CTCTCAGGCG TAATAACAAG GATCCAGAGA AACAGCAACA AGCTGAAGAT 
GCTTATCGGG CATTGATTAA CACCAACTTC GATGCAATGG TCGTAGTTGC CTATGGATTG 
ATATTGCCCC AAGAAATTTT AGATATTACT CAGCAAGCAC CTCGATTTGG AAGCTTTAAC 
ATCCACGCCT CTTTGTTGCC TCGCTGGCGT GGTGCGGCAC CAATTCAGCG AGCGATAGAG 
GCTGGTGATG CCAAAACAGG CGTCTGCATT ATGCAGATGG AAGCAGGCTT AGATACTGGC 
GATGTTGTAT TAACTGCTGA TCTCGCGATT GCCTCAGATG AAACAAGTTC GTCATTGCAT 
GATCGATTGG CAGCTTTGGG CGCAGGGCTG ATTGTTGATG CCCTTTCGCT TTTGCAGGAT 
GGGAAAGGTT TAAGTCGAAC ACCTCAGCCA GCTCTTGGTG TGACCTATGC GGAGAAAATA 
TTAAAAGCTG AGGCTGATCT TGATTGGAGT TTGAGCGCGC GAGAAATTGA TGCTCGTATT 
CGAGCCTTTA ACCCCTTTCC TGGGGCTATC TCAAATTTGA ATGCAGAGAC GATAAAGCTC 
TGGAAATCAC GCCTGGCCGA TGAAGACGCA TATAGTGAGG CTGGGCCCAT CGGGGCGGTA 
ATTGGATTTA GCGAGGATGG CGTGTTCGTG CGCTGTGGTG ATGGTGTTAT TGAAATACTA 
GAAGCCCAAA AGCCTGGTGG AAAAAAAATG AACGCAAAGA CTTGCTTGCA GTCAGTAGAT 
GCCCCAGAAA AATTATTGTG TTTTCAAACA AAGGCGTAA
 
Protein sequence
MKIVFAGTPE FAAQAMRAIH AAGHEIVLAL TQPDRRAGRG MHLQASPVKE FALEKNIPVL 
QPETLRRNNK DPEKQQQAED AYRALINTNF DAMVVVAYGL ILPQEILDIT QQAPRFGSFN 
IHASLLPRWR GAAPIQRAIE AGDAKTGVCI MQMEAGLDTG DVVLTADLAI ASDETSSSLH 
DRLAALGAGL IVDALSLLQD GKGLSRTPQP ALGVTYAEKI LKAEADLDWS LSAREIDARI 
RAFNPFPGAI SNLNAETIKL WKSRLADEDA YSEAGPIGAV IGFSEDGVFV RCGDGVIEIL 
EAQKPGGKKM NAKTCLQSVD APEKLLCFQT KA