| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnuc_1990 |
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| Symbol | |
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| ID | 5052745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009379 |
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| Strand | - |
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| Start bp | 2059965 |
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| End bp | 2061506 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640472164 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001156765 |
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| Protein GI | 145590168 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTTCGT CGAAAGCCCT TCTAATTTCT CGTAGCTATT TCTTTCCGTT GATTTGTGCG
GGAGTACTTT CTGCGTGCGC GGTAGGGCCA GACTTCAAAC AGCCTGACCC ACCTAAGACG
AGTACCTATA CCGAGACCAC CTTATCAAAG CAATTGGTTA CTGCACCAGG CGTTCCAGGC
GGATCTTCAC AGGAATTTAT TGAGGGTGCT GATATTGAAG CCCAGTGGTG GGAGTTGTAT
AAGTCACCCG AACTCGATGC TTTGATTAAG AAGGCGCTCG AGCAGAATCC AAACTTAGGC
GCTGCAGATG CTGCTCTGCG CGTTGCCCAA GAAAACGTAA ACGCACAAAT TGGCGGACAG
TATTTTCCTT CAGTGAGCGC GAGCGGTTCA GCCACTCGTC AATTGCAACC TTCTGCTATT
TATGGATTGC CCTACGGCTC AGATACTTAC AACCTATACA ACACCTCAAT TAATGTGACA
TATAAGTTGG ATGTATTTGG TGGCGCACGT CGTGCAGTTG AAGGTGCAAG AGCACAAGCT
GAAGTAGCGC AATATCAGCT AGAGGGCGCT TACCTTTCTT TAACAGCCAA TGTAGTGACA
GGCGCTGTTA AAGAAGCAGC TCTACGCGCA CAGATGCAAG CTACAGAAGA AATTCTGAAA
GCACAAACCA ATCTGGCTGA GGTTACCGAG AAACAATTAA CGATAGGCAC AGTATCTAAA
GTAGATGTGA CATCACAAAG AACTTTGGTT TCTAACTCTC AAGTGGATTT ATTCACTTAC
GAAAGAAACC TTGCATTCGC GCGCAATCAA CTCGCCGTGC TCGTTGGTGA GCTGCCAAGC
AATGCCAATA TTGCAAAATT TGATTTATCC ACTTTGCAAT TGCCGCAAAA ATTACCGCTG
TCTGTGCCCT CTAGTTTAGT GCGTCAGCGT CCTGACGTTC GTGCTGCAGA GGCTCAACTG
AAAGCGCAGA ATGCCTTCGT AGGTGTTGCT ACTGCTAACT TATTGCCGCA ATTTAATATC
ACTGGATCGA TTGGTTCTGC AGCACTTACT TCAGCTGCAT TGTTTGGCCC TAACTCTGCC
TTATGGGCAA TTGGCGGTGG TATTTTGCAA CCACTCTTTC AGGGTGGTCA ACTCTTGGCA
CAACGTCGTG GTGCGATTGC TAGCTATGAG CAAGCTGCAT ATCAATATCA GGCAACTGTT
TTAAATGCAT TTCAAGAAGT TGCTAATGCA TTACGCGCTC TGGAGACTGG AGCCCAAGCC
TTAAAAGCCG CATCTGATGC AGAGCGCTAT TCCTATGAAA CATTGGACTT GGTTCAGCAT
CAATATAAAT TAGGCACTGC CAGCTATCTA GCAGTTCTCT ACTATCAAAA TTTGTATCAG
CAGGCGAAAG TGAAGTCTGT ATCGGCACAA GCAACCCGTT TCTCGGACAC GGCCGCCCTA
TTTGCAGCAT TGGGGGGCGG TTGGTGGAAT CGTGAGGGCC CTGCTTTCAA ACCAAAAGAC
ATAGCGAGCA AAGATCAAAA TGAAACTTCT GGAAACAATT AA
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| Protein sequence | MFSSKALLIS RSYFFPLICA GVLSACAVGP DFKQPDPPKT STYTETTLSK QLVTAPGVPG
GSSQEFIEGA DIEAQWWELY KSPELDALIK KALEQNPNLG AADAALRVAQ ENVNAQIGGQ
YFPSVSASGS ATRQLQPSAI YGLPYGSDTY NLYNTSINVT YKLDVFGGAR RAVEGARAQA
EVAQYQLEGA YLSLTANVVT GAVKEAALRA QMQATEEILK AQTNLAEVTE KQLTIGTVSK
VDVTSQRTLV SNSQVDLFTY ERNLAFARNQ LAVLVGELPS NANIAKFDLS TLQLPQKLPL
SVPSSLVRQR PDVRAAEAQL KAQNAFVGVA TANLLPQFNI TGSIGSAALT SAALFGPNSA
LWAIGGGILQ PLFQGGQLLA QRRGAIASYE QAAYQYQATV LNAFQEVANA LRALETGAQA
LKAASDAERY SYETLDLVQH QYKLGTASYL AVLYYQNLYQ QAKVKSVSAQ ATRFSDTAAL
FAALGGGWWN REGPAFKPKD IASKDQNETS GNN
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