Gene Pnuc_1940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnuc_1940 
Symbol 
ID5053708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 
KingdomBacteria 
Replicon accessionNC_009379 
Strand
Start bp2015592 
End bp2016749 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content44% 
IMG OID640472115 
Productcytochrome c oxidase, subunit II 
Protein accessionYP_001156716 
Protein GI145590119 
COG category[C] Energy production and conversion 
COG ID[COG1622] Heme/copper-type cytochrome/quinol oxidases, subunit 2
[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID[TIGR02866] cytochrome c oxidase, subunit II 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0684443 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTAT TTGGAAAAGT CACTAGGGCT TCGCTCTATT TAGTAGCAGC CTTTGGCGCT 
GCATTGGCAC ACGCATCTGA AAATATGCCG GGTGGCCCTG CTGTCAATCA GCTGAATTTC
ACGGCTCCAG CAACCAAAAT CATGCAAGAA ATCCATTGGT TACATTGGAT GATGTTGGGG
ATCTGTGCAT TGATTTTTAT CGGTGTTTTT GGGGTGATGT TCTATTCCAT TTTGAAGCAT
CGCAAATCAC TCGGTCACAA GTCAGCCTCG TTTCATGAGA GCACTACTGT AGAAATTATC
TGGACAGTAA TTCCTCTGCT CATCGTGATT GGAATGGCTT TGCCTGCGAC AAAAACAGTT
GTGGCAATGA AAGATACAAC CAATTCAGAT ATCACCATTA AGACTACTGG TTATCAGTGG
AAATGGGGTT ATGACTATAT TAAGGGTGAG GGCGAAGGCA TTAGCTTTTT GTCAACCTTA
ACAACATCTC GTGAGGCGAT TAATAACTTA GCACCTAAAT CAAATACGTA TTTGATGGAA
GTGGATAACG AATTGGTTGT ACCCGTAGGC AAAAAAATTC GCTTGATTAC TACTGCAAAC
GACGTGATTC ACTCTTGGAC TATCCCAGCA TTTGGTGTGA AGCAAGATGC GATCCCAGGA
TTCGTTCGCG ACACTTGGTT TAAGGCTGAA ACTATCGGTA CATTCCGCGG TCAGTGTTCT
GAGCTATGTG GCGCAGAACA TGCTTTCATG CCTATCGTAG TTAAAGTGGT CTCACAGGAT
GACTATACCG CTTGGGTTGC CGAGAAGAAG AAGGCAATGT CTGCTACTTC TGATGATCCT
ACTAAGGTTT ACACACTGGA AGAGCAAAAA GAGCGTGGCG CAAAAGTATA TGCAGCTAAC
TGCGCAGCTT GCCATCAGCC AAATGGTAAA GGCGCTGGTG CTTTCCCAGC ATTGGATGGC
AGCAAAGTGG TGAATGGTCC TAAAGCAGGT CAGATCACTA TTTTGCTAAA CGGTAAAAAT
GCAATGCCGA AGTGGGGTGG TGTTTTGTCT GATGCTGACA TTGCAGCAGT CATAACCTAT
ACCCGCAACT CATGGGGTAA TAAAACGGGT GAAGTGATTC AGACTCAAGA AATTATTACC
GCAAATGGCG GCAAGTAA
 
Protein sequence
MNLFGKVTRA SLYLVAAFGA ALAHASENMP GGPAVNQLNF TAPATKIMQE IHWLHWMMLG 
ICALIFIGVF GVMFYSILKH RKSLGHKSAS FHESTTVEII WTVIPLLIVI GMALPATKTV
VAMKDTTNSD ITIKTTGYQW KWGYDYIKGE GEGISFLSTL TTSREAINNL APKSNTYLME
VDNELVVPVG KKIRLITTAN DVIHSWTIPA FGVKQDAIPG FVRDTWFKAE TIGTFRGQCS
ELCGAEHAFM PIVVKVVSQD DYTAWVAEKK KAMSATSDDP TKVYTLEEQK ERGAKVYAAN
CAACHQPNGK GAGAFPALDG SKVVNGPKAG QITILLNGKN AMPKWGGVLS DADIAAVITY
TRNSWGNKTG EVIQTQEIIT ANGGK