Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnuc_1875 |
Symbol | |
ID | 5052351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 |
Kingdom | Bacteria |
Replicon accession | NC_009379 |
Strand | + |
Start bp | 1951402 |
End bp | 1952418 |
Gene Length | 1017 bp |
Protein Length | 338 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640472048 |
Product | nifR3 family TIM-barrel protein |
Protein accession | YP_001156651 |
Protein GI | 145590054 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.347558 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATTG GCCCTCACGA CCTTGCAAAT AGACTATTTG TAGCCCCTAT GGCTGGGGTA ACTGATCGTC CCTTTAGGCA ACTTTGTAAA AAGTTGGGTG CTGGATATGC CGTTTCAGAA ATGGTGGCCT CCAATGCGCT TCTTTGGAAG AGTGAGAAAA CTCAGCGTCG CGCCAACCAC ATTGGTGAAT TTAAGCCAAT CGCAGTTCAA ATCGCTGGGG CAGATCCAGC CATGATGGCG GCGGCTGCCA AAATAAATGT TGATCATGGC GCACAAATTA TTGACATCAA TATGGGCTGC CCCGCTAAAA AAGTTTGCAA TGTTGCAGCC GGTTCCGCTT TATTGCGTGA CGAGCCTTTA GTGCAACAAA TTCTTGAGGC TGTTGTAAAT GCTGTTGGTG TTGGTCCCGA TGCCGTTCCG GTTACTTTGA AGATTCGTAC GGGCTGGGAT CGCGAACATA AAAATGCCAT TGAGATTGCA CGGCTTGCAG AAAAGTCTGG CATCTCCATG CTGACTGTTC ATGGCCGTAC TCGCGCTGAT TTATATCATG GTGAAGCGGA GTATGAAACG ATCACTGCTG TAAAAAATTC TGTGAATATT CCAGTGGTAG CAAATGGTGA TATTCATTCC CCCGAAAAGG CTGAACAAGT TTTAAAGATA ACTGGCGCTG ATGCCATCAT GATTGGGCGT GCTGCCCAGG GTCGCCCTTG GATCTTTCGC GAAATTAATC ACTACCTTGA AACTGGGGGG AAGTTACCCA CCCCGGAGAT CAATGAGATC CAGGCAATTA TGAATGCCCA TCTCTTGGAT CACTACGAGT TCTACGGTGA ACACATTGGC CTTCGTACTG CCCGCAAGCA TATTGGCTGG TATTGCAAAG GCTTAAGAGA CTCCCATGCA TTTCGTCAGC GCATGAATAC TGCTGATGAC TGCAAAACCC AATTACAAAT GGTGAATGAT TACTTTAATG AAATGAAATC TCATTCTGAT CGCCTCCTCT TTTTAGAGGC AGCTTAA
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Protein sequence | MKIGPHDLAN RLFVAPMAGV TDRPFRQLCK KLGAGYAVSE MVASNALLWK SEKTQRRANH IGEFKPIAVQ IAGADPAMMA AAAKINVDHG AQIIDINMGC PAKKVCNVAA GSALLRDEPL VQQILEAVVN AVGVGPDAVP VTLKIRTGWD REHKNAIEIA RLAEKSGISM LTVHGRTRAD LYHGEAEYET ITAVKNSVNI PVVANGDIHS PEKAEQVLKI TGADAIMIGR AAQGRPWIFR EINHYLETGG KLPTPEINEI QAIMNAHLLD HYEFYGEHIG LRTARKHIGW YCKGLRDSHA FRQRMNTADD CKTQLQMVND YFNEMKSHSD RLLFLEAA
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